comparison SMART/Java/Python/structure/Transcript.py @ 18:94ab73e8a190

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17:b0e8584489e6

		newTranscript.setEnd(newEnd)
		newTranscript.setStart(newStart)
		newTranscript.exons = theseExons
		return newTranscript
			
	
	def getSqlVariables(cls):
		"""
		Get the properties of the object that should be saved in a database
		"""

18:94ab73e8a190

		newTranscript.setEnd(newEnd)
		newTranscript.setStart(newStart)
		newTranscript.exons = theseExons
		return newTranscript
			

	def getIntersection(self, transcript):
		"""
		Get the intersection between this transcript and another one
		@param transcript: object to be compared to
		@type  transcript: class L{Transcript<Transcript>}
		@return:           an other transcript
		"""
		if self.getChromosome() != transcript.getChromosome() or self.getDirection() != transcript.getDirection():
			return None
		newTranscript = Transcript()
		newTranscript.setDirection(self.getDirection())
		newTranscript.setChromosome(self.getChromosome())
		newTranscript.setName("%s_intersect_%s" % (self.getName(), transcript.getName()))
		newExons = []
		for thisExon in self.getExons():
			for thatExon in transcript.getExons():
				newExon = thisExon.getIntersection(thatExon)
				if newExon != None:
					newExons.append(newExon)
		if not newExons:
			return None
		newTranscript.exons = newExons
		return newTranscript
			
	
	def getSqlVariables(cls):
		"""
		Get the properties of the object that should be saved in a database
		"""