Mercurial > repos > yufei-luo > s_mart
comparison SMART/Java/Python/test/MockGetLetterDistribution.py @ 18:94ab73e8a190
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| author | m-zytnicki |
|---|---|
| date | Mon, 29 Apr 2013 03:20:15 -0400 |
| parents | |
| children |
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| 17:b0e8584489e6 | 18:94ab73e8a190 |
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| 1 class MockGetLetterDistributionFasta (object) : | |
| 2 def write(self,inFileName): | |
| 3 f = open(inFileName,'w') | |
| 4 f.write('>HWI-EAS337_3:7:1:415:1217/1\n') | |
| 5 f.write('GATGTGCAGACTTTTCACGCAGGACTACATCACTGT\n') | |
| 6 f.write('>HWI-EAS337_3:7:1:208:1489/1\n') | |
| 7 f.write('GGAAACATATGCACATAAACGTTGAAATCATGCTTA\n') | |
| 8 f.write('>HWI-EAS337_3:7:1:278:1153\n') | |
| 9 f.write('GAGAAAACCTGTAATAAATACTGAGAGAAAGTAGGG\n') | |
| 10 f.close() | |
| 11 | |
| 12 class MockGetLetterDistributionFastq (object) : | |
| 13 def write(self,inFileName): | |
| 14 f = open(inFileName,'w') | |
| 15 f.write('@HWI-EAS337_3:7:1:415:1217/1\n') | |
| 16 f.write('GATGTGCAGACTTTTCACGCAGGACTACATCACTGT\n') | |
| 17 f.write('+HWI-EAS337_3:7:1:415:1217/1\n') | |
| 18 f.write('WWWVVVWPWWWVWWWWVVVVKVPWWVVWVWUUQUTQ\n') | |
| 19 f.write('@HWI-EAS337_3:7:1:208:1489/1\n') | |
| 20 f.write('GGAAACATATGCACATAAACGTTGAAATCATGCTTA\n') | |
| 21 f.write('+HWI-EAS337_3:7:1:208:1489/1\n') | |
| 22 f.write('WWWWWWWWWWWWWWWWWVWWVWWVWWWWWWUUUUUU\n') | |
| 23 f.write('@HWI-EAS337_3:7:1:278:1153/1\n') | |
| 24 f.write('GAGAAAACCTGTAATAAATACTGAGAGAAAGTAGGG\n') | |
| 25 f.write('+HWI-EAS337_3:7:1:278:1153/1\n') | |
| 26 f.write('WWWWWWWWWWWWWWWWWWWWWWVWVVVWWVUUUUUR\n') | |
| 27 f.close() | |
| 28 | |
| 29 class MockGetLetterDistributionExpectedCSV (object) : | |
| 30 def write(self,inFileName): | |
| 31 f = open(inFileName,'w') | |
| 32 f.write('1;A=0%;C=0%;T=0%;G=0%;\n') | |
| 33 f.write('2;A=0%;C=0%;T=0%;G=100.00%;\n') | |
| 34 f.write('3;A=66.67%;C=0%;T=0%;G=33.33%;\n') | |
| 35 f.write('4;A=33.33%;C=0%;T=33.33%;G=33.33%;\n') | |
| 36 f.write('5;A=66.67%;C=0%;T=0%;G=33.33%;\n') | |
| 37 f.write('6;A=66.67%;C=0%;T=33.33%;G=0%;\n') | |
| 38 f.write('7;A=33.33%;C=33.33%;T=0%;G=33.33%;\n') | |
| 39 f.write('8;A=66.67%;C=33.33%;T=0%;G=0%;\n') | |
| 40 f.write('9;A=33.33%;C=33.33%;T=33.33%;G=0%;\n') | |
| 41 f.write('10;A=33.33%;C=33.33%;T=0%;G=33.33%;\n') | |
| 42 f.write('11;A=33.33%;C=0%;T=66.67%;G=0%;\n') | |
| 43 f.write('12;A=0%;C=33.33%;T=0%;G=66.67%;\n') | |
| 44 f.write('13;A=0%;C=33.33%;T=66.67%;G=0%;\n') | |
| 45 f.write('14;A=66.67%;C=0%;T=33.33%;G=0%;\n') | |
| 46 f.write('15;A=33.33%;C=33.33%;T=33.33%;G=0%;\n') | |
| 47 f.write('16;A=33.33%;C=0%;T=66.67%;G=0%;\n') | |
| 48 f.write('17;A=33.33%;C=33.33%;T=33.33%;G=0%;\n') | |
| 49 f.write('18;A=100.00%;C=0%;T=0%;G=0%;\n') | |
| 50 f.write('19;A=66.67%;C=33.33%;T=0%;G=0%;\n') | |
| 51 f.write('20;A=33.33%;C=0%;T=33.33%;G=33.33%;\n') | |
| 52 f.write('21;A=33.33%;C=66.67%;T=0%;G=0%;\n') | |
| 53 f.write('22;A=33.33%;C=33.33%;T=0%;G=33.33%;\n') | |
| 54 f.write('23;A=0%;C=0%;T=66.67%;G=33.33%;\n') | |
| 55 f.write('24;A=0%;C=0%;T=33.33%;G=66.67%;\n') | |
| 56 f.write('25;A=66.67%;C=0%;T=0%;G=33.33%;\n') | |
| 57 f.write('26;A=33.33%;C=33.33%;T=0%;G=33.33%;\n') | |
| 58 f.write('27;A=66.67%;C=0%;T=33.33%;G=0%;\n') | |
| 59 f.write('28;A=66.67%;C=0%;T=0%;G=33.33%;\n') | |
| 60 f.write('29;A=33.33%;C=33.33%;T=33.33%;G=0%;\n') | |
| 61 f.write('30;A=66.67%;C=33.33%;T=0%;G=0%;\n') | |
| 62 f.write('31;A=66.67%;C=0%;T=33.33%;G=0%;\n') | |
| 63 f.write('32;A=0%;C=33.33%;T=33.33%;G=33.33%;\n') | |
| 64 f.write('33;A=33.33%;C=0%;T=33.33%;G=33.33%;\n') | |
| 65 f.write('34;A=33.33%;C=66.67%;T=0%;G=0%;\n') | |
| 66 f.write('35;A=0%;C=0%;T=66.67%;G=33.33%;\n') | |
| 67 f.write('36;A=0%;C=0%;T=33.33%;G=66.67%;\n') | |
| 68 f.close() | |
| 69 |