Mercurial > repos > yufei-luo > s_mart
comparison SMART/Java/Python/test/Test_F_plot.py @ 18:94ab73e8a190
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author | m-zytnicki |
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date | Mon, 29 Apr 2013 03:20:15 -0400 |
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17:b0e8584489e6 | 18:94ab73e8a190 |
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1 import unittest | |
2 import os | |
3 from commons.core.utils.FileUtils import FileUtils | |
4 | |
5 TestF_PATH = os.environ['REPET_PATH'] + '/SMART/Java/Python/TestFiles' | |
6 | |
7 | |
8 class Test_F_plot(unittest.TestCase): | |
9 | |
10 def setUp(self): | |
11 self.outputFileName = "testOut.png" | |
12 | |
13 def tearDown(self): | |
14 os.remove(self.outputFileName) | |
15 | |
16 def test_run_default_option(self): | |
17 cmd = "python ../plot.py -i %s/mapperAnalyzerOutput.gff3 -f gff3 -x identity -y nbMismatches -s line -o %s " % (TestF_PATH, self.outputFileName) | |
18 os.system(cmd) | |
19 self.assertTrue(FileUtils.isRessourceExists(self.outputFileName)) | |
20 | |
21 def test_run_log_option(self): | |
22 cmd = "python ../plot.py -i %s/mapperAnalyzerOutput.gff3 -f gff3 -x identity -y nbMismatches -s line -o %s -l xy" % (TestF_PATH, self.outputFileName) | |
23 os.system(cmd) | |
24 self.assertTrue(FileUtils.isRessourceExists(self.outputFileName)) | |
25 | |
26 def test_run_z_xDefault_yDefault_heatPoints_option(self): | |
27 cmd = "python ../plot.py -i %s/testPlot.gff3 -f gff3 -x value1 -X 1 -y value2 -Y 1 -z value3 -s heatPoints -o %s -v 10 " % (TestF_PATH, self.outputFileName) | |
28 os.system(cmd) | |
29 self.assertTrue(FileUtils.isRessourceExists(self.outputFileName)) | |
30 | |
31 def test_points_option(self): | |
32 cmd = "python ../plot.py -i %s/testPlot.gff3 -f gff3 -x value1 -X 1 -y value2 -Y 1 -s points -o %s -v 10 " % (TestF_PATH, self.outputFileName) | |
33 os.system(cmd) | |
34 self.assertTrue(FileUtils.isRessourceExists(self.outputFileName)) | |
35 | |
36 def test_xDefault_points_option(self): | |
37 cmd = "python ../plot.py -i %s/testPlot.gff3 -f gff3 -x value1 -X 1 -n 2 -s barplot -o %s -v 10 " % (TestF_PATH, self.outputFileName) | |
38 os.system(cmd) | |
39 self.assertTrue(FileUtils.isRessourceExists(self.outputFileName)) | |
40 | |
41 if __name__ == "__main__": | |
42 unittest.main() |