comparison SMART/Java/Python/test/Test_F_plot.py @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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17:b0e8584489e6 18:94ab73e8a190
1 import unittest
2 import os
3 from commons.core.utils.FileUtils import FileUtils
4
5 TestF_PATH = os.environ['REPET_PATH'] + '/SMART/Java/Python/TestFiles'
6
7
8 class Test_F_plot(unittest.TestCase):
9
10 def setUp(self):
11 self.outputFileName = "testOut.png"
12
13 def tearDown(self):
14 os.remove(self.outputFileName)
15
16 def test_run_default_option(self):
17 cmd = "python ../plot.py -i %s/mapperAnalyzerOutput.gff3 -f gff3 -x identity -y nbMismatches -s line -o %s " % (TestF_PATH, self.outputFileName)
18 os.system(cmd)
19 self.assertTrue(FileUtils.isRessourceExists(self.outputFileName))
20
21 def test_run_log_option(self):
22 cmd = "python ../plot.py -i %s/mapperAnalyzerOutput.gff3 -f gff3 -x identity -y nbMismatches -s line -o %s -l xy" % (TestF_PATH, self.outputFileName)
23 os.system(cmd)
24 self.assertTrue(FileUtils.isRessourceExists(self.outputFileName))
25
26 def test_run_z_xDefault_yDefault_heatPoints_option(self):
27 cmd = "python ../plot.py -i %s/testPlot.gff3 -f gff3 -x value1 -X 1 -y value2 -Y 1 -z value3 -s heatPoints -o %s -v 10 " % (TestF_PATH, self.outputFileName)
28 os.system(cmd)
29 self.assertTrue(FileUtils.isRessourceExists(self.outputFileName))
30
31 def test_points_option(self):
32 cmd = "python ../plot.py -i %s/testPlot.gff3 -f gff3 -x value1 -X 1 -y value2 -Y 1 -s points -o %s -v 10 " % (TestF_PATH, self.outputFileName)
33 os.system(cmd)
34 self.assertTrue(FileUtils.isRessourceExists(self.outputFileName))
35
36 def test_xDefault_points_option(self):
37 cmd = "python ../plot.py -i %s/testPlot.gff3 -f gff3 -x value1 -X 1 -n 2 -s barplot -o %s -v 10 " % (TestF_PATH, self.outputFileName)
38 os.system(cmd)
39 self.assertTrue(FileUtils.isRessourceExists(self.outputFileName))
40
41 if __name__ == "__main__":
42 unittest.main()