Mercurial > repos > yufei-luo > s_mart

comparison SMART/galaxy/ConvertTranscriptFile.xml @ 18:94ab73e8a190

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Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
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17:b0e8584489e6 18:94ab73e8a190
1 <tool id="ConvertTranscriptFile" name="convert transcript file"> 1 <tool id="ConvertTranscriptFile" name="convert transcript file">
2 <description>Convert a file from a format to another.</description> 2 <description>Convert a file from a format to another.</description>
3 <requirements>
4 <requirement type="set_environment">PYTHONPATH</requirement>
5 </requirements>
3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFormatType.inputFileName 6 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFormatType.inputFileName
4 #if $inputFormatType.FormatInputFileName == 'gff3': 7 #if $inputFormatType.FormatInputFileName == 'gff3':
5 -f gff3 8 -f gff3
6 #elif $inputFormatType.FormatInputFileName == 'bed': 9 #elif $inputFormatType.FormatInputFileName == 'bed':
7 -f bed 10 -f bed