comparison SMART/galaxy/getReadDistribution.xml @ 18:94ab73e8a190

Uploaded

17:b0e8584489e6

<tool id="getReadDistribution" name="get read distribution">
	<description>Get Read Distribution v1.0.1: Plot the number of identical reads and give the most represented.</description>
	<command interpreter="python">
		../Java/Python/WrappGetReadDistribution.py -i $formatType.inputFileName
		#if $formatType.FormatInputFileName == 'fasta':
			-f fasta
		#elif $formatType.FormatInputFileName == 'fastq':

		</conditional>

	</inputs>

	<outputs>
		<data name="outputFile" format="tar" label="[getReadDistribution] tar out file" help="You can not see the results directly from galaxy, but you can download this tar output file."/>
	</outputs> 

    <help>
        This script gives a .tar out file, if you want to take look at the results, you have to download it.
    </help>	

18:94ab73e8a190

<tool id="getReadDistribution" name="get read distribution">
	<description>Get Read Distribution v1.0.1: Plot the number of identical reads and give the most represented.</description>
	<requirements>
		<requirement type="set_environment">PYTHONPATH</requirement>
	</requirements>
	<command interpreter="python">
		../Java/Python/WrappGetReadDistribution.py -i $formatType.inputFileName
		#if $formatType.FormatInputFileName == 'fasta':
			-f fasta
		#elif $formatType.FormatInputFileName == 'fastq':

		</conditional>

	</inputs>

	<outputs>
		<data name="outputFile" format="tar" label="[get read distribution] tar out file" help="You can not see the results directly from galaxy, but you can download this tar output file."/>
	</outputs> 

    <help>
        This script gives a .tar out file, if you want to take look at the results, you have to download it.
    </help>