Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/modifySequenceList.xml @ 18:94ab73e8a190
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| author | m-zytnicki |
|---|---|
| date | Mon, 29 Apr 2013 03:20:15 -0400 |
| parents | 440ceca58672 |
| children | 0ab839023fe4 |
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| 17:b0e8584489e6 | 18:94ab73e8a190 |
|---|---|
| 1 <tool id="modifySequenceList" name="modify sequence list"> | 1 <tool id="modifySequenceList" name="modify sequence list"> |
| 2 <description>Extend or shring a list of sequences. </description> | 2 <description>Extend or shring a list of sequences. </description> |
| 3 <requirements> | |
| 4 <requirement type="set_environment">PYTHONPATH</requirement> | |
| 5 </requirements> | |
| 3 <command interpreter="python"> ../Java/Python/modifySequenceList.py -i $inputFile -f fasta | 6 <command interpreter="python"> ../Java/Python/modifySequenceList.py -i $inputFile -f fasta |
| 4 #if $OptionStart.Start == "Yes": | 7 #if $OptionStart.Start == "Yes": |
| 5 -s $OptionStart.StartVal | 8 -s $OptionStart.StartVal |
| 6 #end if | 9 #end if |
| 7 #if $OptionEnd.End == "Yes": | 10 #if $OptionEnd.End == "Yes": |
| 38 </when> | 41 </when> |
| 39 </conditional> | 42 </conditional> |
| 40 </inputs> | 43 </inputs> |
| 41 | 44 |
| 42 <outputs> | 45 <outputs> |
| 43 <data format="fasta" name="outputFile" label="[modifySequenceList] Output File"/> | 46 <data format="fasta" name="outputFile" label="[modify sequence list] output file"/> |
| 44 </outputs> | 47 </outputs> |
| 45 | 48 |
| 46 <help> | 49 <help> |
| 47 This tool reads a list of sequences (in multi-FASTA/Q format) that you provide and shrinks each sequence to the *n* first nucleotides or the *n* last nucleotides. | 50 This tool reads a list of sequences (in multi-FASTA/Q format) that you provide and shrinks each sequence to the *n* first nucleotides or the *n* last nucleotides. |
| 48 </help> | 51 </help> |