Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/removeExonLines.xml @ 18:94ab73e8a190
Uploaded
| author | m-zytnicki |
|---|---|
| date | Mon, 29 Apr 2013 03:20:15 -0400 |
| parents | 769e306b7933 |
| children | 0ab839023fe4 |
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| 17:b0e8584489e6 | 18:94ab73e8a190 |
|---|---|
| 1 <tool id="removeExonLines" name="remove exon lines"> | 1 <tool id="removeExonLines" name="remove exon lines"> |
| 2 <description>Removes the lines containing Exon.</description> | 2 <description>Removes the lines containing Exon.</description> |
| 3 <requirements> | |
| 4 <requirement type="set_environment">PYTHONPATH</requirement> | |
| 5 </requirements> | |
| 3 <command interpreter="sh"> ../Java/Python/removeExonLines.sh $inputFile > $outputFile </command> | 6 <command interpreter="sh"> ../Java/Python/removeExonLines.sh $inputFile > $outputFile </command> |
| 4 <inputs> | 7 <inputs> |
| 5 <param name="inputFile" type="data" label="Input File" format="gff3"/> | 8 <param name="inputFile" type="data" label="Input File" format="gff3"/> |
| 6 </inputs> | 9 </inputs> |
| 7 | 10 |
| 8 <outputs> | 11 <outputs> |
| 9 <data format="gff3" name="outputFile" label="[removeExonLine] Output File"/> | 12 <data format="gff3" name="outputFile" label="[remove exon line] output file"/> |
| 10 </outputs> | 13 </outputs> |
| 11 | 14 |
| 12 <help> | 15 <help> |
| 13 command example: sh removeExonLines.sh input.gff3 | 16 command example: sh removeExonLines.sh input.gff3 |
| 14 </help> | 17 </help> |