Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/restrictFromSize.xml @ 18:94ab73e8a190
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| author | m-zytnicki |
|---|---|
| date | Mon, 29 Apr 2013 03:20:15 -0400 |
| parents | 440ceca58672 |
| children | 0ab839023fe4 |
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| 17:b0e8584489e6 | 18:94ab73e8a190 |
|---|---|
| 1 <tool id="restrictFromSize" name="restrict from size"> | 1 <tool id="restrictFromSize" name="restrict from size"> |
| 2 <description>Select the elements of a list of sequences or transcripts with a given size.</description> | 2 <description>Select the elements of a list of sequences or transcripts with a given size.</description> |
| 3 <requirements> | |
| 4 <requirement type="set_environment">PYTHONPATH</requirement> | |
| 5 </requirements> | |
| 3 <command interpreter="python"> | 6 <command interpreter="python"> |
| 4 ../Java/Python/restrictFromSize.py -i $formatType.inputFileName | 7 ../Java/Python/restrictFromSize.py -i $formatType.inputFileName |
| 5 #if $formatType.FormatInputFileName == 'fasta': | 8 #if $formatType.FormatInputFileName == 'fasta': |
| 6 -f fasta | 9 -f fasta |
| 7 #elif $formatType.FormatInputFileName == 'bed': | 10 #elif $formatType.FormatInputFileName == 'bed': |
| 87 </conditional> | 90 </conditional> |
| 88 | 91 |
| 89 </inputs> | 92 </inputs> |
| 90 | 93 |
| 91 <outputs> | 94 <outputs> |
| 92 <data name="outputFileGff" format="gff3" label="[restrictFromSize] Output File"/> | 95 <data name="outputFileGff" format="gff3" label="[restrict from size] output file"/> |
| 93 </outputs> | 96 </outputs> |
| 94 | 97 |
| 95 <help> | 98 <help> |
| 96 Reads a list of sequences or genomic coordinates and outputs those which are longer and / or shorter than a given size ---which you provide. | 99 Reads a list of sequences or genomic coordinates and outputs those which are longer and / or shorter than a given size ---which you provide. |
| 97 </help> | 100 </help> |