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comparison commons/pyRepetUnit/hmmer/tests/datas/Outputhmmpfam @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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17:b0e8584489e6 18:94ab73e8a190
1 hmmpfam - search one or more sequences against HMM database
2 HMMER 2.3.2 (Oct 2003)
3 Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
4 Freely distributed under the GNU General Public License (GPL)
5 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
6 HMM file: myhmms
7 Sequence file: 7LES_DROME
8 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
9
10 Query sequence: 7LES_DROME
11 Accession: P13368
12 Description: SEVENLESS PROTEIN (EC 2.7.1.112).
13
14 Scores for sequence family classification (score includes all domains):
15 Model Description Score E-value N
16 -------- ----------- ----- ------- ---
17 pkinase Protein kinase domain 314.6 6e-95 1
18 fn3 Fibronectin type III domain 176.6 2e-53 6
19 rrm -40.4 0.72 1
20
21 Parsed for domains:
22 Model Domain seq-f seq-t hmm-f hmm-t score E-value
23 -------- ------- ----- ----- ----- ----- ----- -------
24 fn3 1/6 437 522 .. 1 84 [] 48.3 8.8e-15
25 fn3 2/6 825 914 .. 1 84 [] 13.4 2.2e-06
26 fn3 3/6 1292 1389 .. 1 84 [] 15.9 1.2e-06
27 fn3 4/6 1799 1891 .. 1 84 [] 63.5 2.3e-19
28 fn3 5/6 1899 1978 .. 1 84 [] 15.2 1.5e-06
29 fn3 6/6 1993 2107 .. 1 84 [] 20.3 4.3e-07
30 pkinase 1/1 2209 2483 .. 1 294 [] 314.6 6e-95
31 rrm 1/1 2223 2284 .. 1 77 [] -40.4 0.72
32
33 Alignments of top-scoring domains:
34 fn3: domain 1 of 6, from 437 to 522: score 48.3, E = 8.8e-15
35 CS C CCCCEEEEEECCTTCCEEEEECCC CCCCCCCEEEEE.ECCCCCC
36 *->P.saPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge
37 P saP + +++ ++ l ++W p + ngpi+gY++++ +++ g+
38 7LES_DROME 437 PiSAPVIEHLMGLDDSHLAVHWHPGRfTNGPIEGYRLRL-SSSEGNA 482
39
40 CS CCCCEEECCCCCECECCEEEEECCCCEEEEEECCC CCCC
41 wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
42 + e+ vp sy+++ L++gt+Y++ + +n +G+Gp
43 7LES_DROME 483 TSEQLVPAGRGSYIFSQLQAGTNYTLALSMINKQGeGPVA 522
44
45 fn3: domain 2 of 6, from 825 to 914: score 13.4, E = 2.2e-06
46 CS CCCCCEEEEEECCTTCCEEEEECCC CCCCCCCEEEEE.EC
47 *->PsaPtnltvtdvtstsltlsWsppt.......gngpitgYevtyRqp
48 ++P l++ ++ + +sW+ p++++ ++ + + +Ye+++ +
49 7LES_DROME 825 GGKPHSLKALL-GAQAAKISWKEPErnpyqsaDAARSWSYELEV-LD 869
50
51 CS CCCCCCCCCE EECCCCCECECCEEEEECCCCEEEEEECCC CCCC
52 knggewnelt.vpgtttsytltgLkPgteYevrVqAvnggG..GpeS<-*
53 + +++ ++++++ g+ + l+ L+P+ Y++rV+A+n +G++G+++
54 7LES_DROME 870 VASQSAFSIRnIRGPI--FGLQRLQPDNLYQLRVRAINVDGepGEWT 914
55
56 fn3: domain 3 of 6, from 1292 to 1389: score 15.9, E = 1.2e-06
57 CS CCCCCEEEE EEC CTTCCEEEEECCC CCCCCCCEEE
58 *->PsaPtnltv......tdv..tstsltlsWsppt....gngpitgYev
59 Ps+P++l+v ++ t++++ s++l+W++p+++++ Y +
60 7LES_DROME 1292 PSQPRRLRVfverlaTALqeANVSAVLRWDAPEqgqeAPMQALEYHI 1338
61
62 CS EE.ECCCCCCCCCCEEECCCC CECECCEEEEECCCCEEEEEECCC
63 tyRqpknggewneltvpgttt.sytltgLkPgteYevrVqAvnggG....
64 ++ + g e +e +++ ++ ++ L+P+ +Y+++V A+ ++++
65 7LES_DROME 1339 SC-W--VGSELHEELRLNQSAlEARVEHLQPDQTYHFQVEARVAATgaaa 1385
66
67 CS CCCC
68 GpeS<-*
69 G++S
70 7LES_DROME 1386 GAAS 1389
71
72 fn3: domain 4 of 6, from 1799 to 1891: score 63.5, E = 2.3e-19
73 CS CCCCCEEEEEECCTTCCEEEEECCC CCCCCCCEEEEE.ECCCCCC
74 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge.
75 Ps+P+n++v+ +++ +l +sW pp++ +++ +Y++++ q++ +ge+
76 7LES_DROME 1799 PSPPRNFSVRVLSPRELEVSWLPPEqLRSESVYYTLHW-QQELDGEn 1844
77
78 CS CCCCEEECCCCCECECCEEEEECCCCEEEEEECCC CCCC
79 .......wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
80 +++++ + + + t+ ++ ltg kPg+ Y+++VqA+ + +++ S
81 7LES_DROME 1845 vqdrrewEAHERRLETAGTHRLTGIKPGSGYSLWVQAHATPTkSNSS 1891
82
83 fn3: domain 5 of 6, from 1899 to 1978: score 15.2, E = 1.5e-06
84 CS CCCCCEEEEEECCTTCCEEEEECCCCCCCCCCEEEEE.ECCCCCCCC
85 *->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
86 + l+ +++++sl+l+W p+ + ++++R ++ e
87 7LES_DROME 1899 FAELPELQLLELGPYSLSLTWAGT--PDPLGSLQLECR---SSAEQL 1940
88
89 CS CCEEECCCCCECECCEEEEECCCCEEEEEECCC CCCC
90 eltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
91 +++v g+ t ++++ L+P t+Y+ r+ ++++G++
92 7LES_DROME 1941 RRNVAGNHTKMVVEPLQPRTRYQCRLLLGYAATpGAPL 1978
93
94 fn3: domain 6 of 6, from 1993 to 2107: score 20.3, E = 4.3e-07
95 CS CCCCCEEEEEECCTTCCEEEEECCC CCCCCCCEEEEE.ECCCCCC
96 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge.
97 Ps+P+ ++ + + + ++++W++++++++pi Y+++ ++++ +
98 7LES_DROME 1993 PSQPGKPQLEHIAEEVFRVTWTAARgNGAPIALYNLEA-LQARSDIr 2038
99
100 CS CCCCEEECCCC CECECCEEEEE
101 ...........................wneltvpgttt.sytltgLkPgt
102 +++++++++++++ ++ + +++ ++++l+ +tt s++++ L +
103 7LES_DROME 2039 rrrrrrrrnsggsleqlpwaeepvvveDQWLDFCNTTElSCIVKSLHSSR 2088
104
105 CS CCCCEEEEEE CCC CCCC
106 eYevrVqAvn.ggG.GpeS<-*
107 +rV+A++ ++G Gp+S
108 7LES_DROME 2089 LLLFRVRARSlEHGwGPYS 2107
109
110 pkinase: domain 1 of 1, from 2209 to 2483: score 314.6, E = 6e-95
111 *->yelleklGeGsfGkVykakhkd...ktgkiVAvKilkkekesikekr
112 ++ll+ lG+G+fG+Vy++++k+++++ ++VA+K l+k+++++ e
113 7LES_DROME 2209 LKLLRFLGSGAFGEVYEGQLKTedsEEPQRVAIKSLRKGASEFAE-- 2253
114
115 flrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrng
116 +l E+q++ +++H+NIvrl g++ + +++ l+mE+me GdL++ylr+ +
117 7LES_DROME 2254 LLQEAQLMSNFKHENIVRLVGICF-DTESISLIMEHMEAGDLLSYLRAAR 2302
118
119 ..........gplsekeakkialQilrGleYLHsngivHRDLKpeNILld
120 +++++++++ ls e++ ++ ++++G +YL+++++vHRDL+ +N+L++
121 7LES_DROME 2303 atstqepqptAGLSLSELLAMCIDVANGCSYLEDMHFVHRDLACRNCLVT 2352
122
123 en......dgtvKiaDFGLArlle..sssklttfvGTpwYmmAPEvileg
124 e +++++++ tvKi+DFGLAr++++++++++ + + p+++m+PE l +
125 7LES_DROME 2353 EStgstdrRRTVKIGDFGLARDIYksDYYRKEGEGLLPVRWMSPES-LVD 2401
126
127 rgysskvDvWSlGviLyElltggplfpgadlpaftggdevdqliifvlkl
128 +++++DvW++Gv+++E+lt g ++
129 7LES_DROME 2402 GLFTTQSDVWAFGVLCWEILTLG-------------------------QQ 2426
130
131 PfsdelpktridpleelfriikrpglrlplpsncSeelkdLlkkcLnkDP
132 P+ ++ +e+++++k+ g+rl +p+ c e l++Ll c++ DP
133 7LES_DROME 2427 PYAA-------RNNFEVLAHVKE-GGRLQQPPMCTEKLYSLLLLCWRTDP 2468
134
135 skRpGsatakeilnhpwf<-*
136 ++Rp +++ + n +
137 7LES_DROME 2469 WERP---SFRRCYNTLHA 2483
138
139 rrm: domain 1 of 1, from 2223 to 2284: score -40.4, E = 0.72
140 *->lfVgNL.......ppdvteedLkdlFskfGpi.vsikivkDhkektk
141 ++ g L+++++++p+ v + L++ s+f + +++++ +
142 7LES_DROME 2223 VYEGQLktedseePQRVAIKSLRKGASEFAELlQEAQLMSN------ 2263
143
144 etgkskGfaFVeFeseedAekAlealnGkelggrklrv<-*
145 F+ e+ ++ l G+ ++ +
146 7LES_DROME 2264 ------------FKH----ENIVR-LVGICFDTESISL 2284
147
148 //