comparison smart_toolShed/SMART/galaxy/ConvertTranscriptFile_BlastToCsv.xml @ 0:e0f8dcca02ed

Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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-1:000000000000 0:e0f8dcca02ed
1 <tool id="ConvertTranscriptFile_BlastToCsv" name="Blast (-m 8) -> Csv">
2 <description>Convert Blast (-m 8) File to Csv File.</description>
3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f blast -o $outputFile -g csv yes 2>$logFile </command>
4 <inputs>
5 <param name="inputFile" type="data" label="Input File" format="tabular"/>
6 </inputs>
7
8 <outputs>
9 <data format="csv" name="outputFile" label="[blast -> csv] Output File"/>
10 <data format="txt" name="logFile" label="[blast -> csv] Log File"/>
11 </outputs>
12
13 <help>
14 </help>
15 </tool>