Mercurial > repos > yufei-luo > s_mart
comparison smart_toolShed/SMART/galaxy/ConvertTranscriptFile_BlastToCsv.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author | yufei-luo |
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date | Thu, 17 Jan 2013 10:52:14 -0500 |
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-1:000000000000 | 0:e0f8dcca02ed |
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1 <tool id="ConvertTranscriptFile_BlastToCsv" name="Blast (-m 8) -> Csv"> | |
2 <description>Convert Blast (-m 8) File to Csv File.</description> | |
3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f blast -o $outputFile -g csv yes 2>$logFile </command> | |
4 <inputs> | |
5 <param name="inputFile" type="data" label="Input File" format="tabular"/> | |
6 </inputs> | |
7 | |
8 <outputs> | |
9 <data format="csv" name="outputFile" label="[blast -> csv] Output File"/> | |
10 <data format="txt" name="logFile" label="[blast -> csv] Log File"/> | |
11 </outputs> | |
12 | |
13 <help> | |
14 </help> | |
15 </tool> |