comparison smart_toolShed/SMART/galaxy/ConvertTranscriptFile_BlastToGff2.xml @ 0:e0f8dcca02ed

Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.

0:e0f8dcca02ed

<tool id="ConvertTranscriptFile_BlastToGff2" name="Blast (-m 8) -> Gff2">
  <description>Convert Blast (-m 8) File to Gff2 File.</description>
  <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f blast -o $outputFile -g gff2 yes 2>$logFile </command>
  <inputs>
    <param name="inputFile" type="data" label="Input File" format="tabular"/>
  </inputs>

  <outputs>
    <data format="gff" name="outputFile" label="[blast -> gff2] Output File"/>
    <data format="txt" name="logFile" label="[blast -> gff2] Log File"/>
  </outputs>

  <help>
  </help>
</tool>