comparison SMART/Java/Python/cleaning/GffCleaner.py @ 41:e57682cd6997

Uploaded

40:cd852f3e04ab

		for cpt, line in enumerate(self.inputHandle):
			if not line or line[0] == "#": continue
			if line[0] == ">": break
			parsedLine = ParsedLine(line, cpt)
			if self.acceptedTypes == None or parsedLine.type in self.acceptedTypes:
				self.lines[parsedLine.id] = parsedLine
			progress.inc()
		progress.done()

	def sort(self):

41:e57682cd6997

		for cpt, line in enumerate(self.inputHandle):
			if not line or line[0] == "#": continue
			if line[0] == ">": break
			parsedLine = ParsedLine(line, cpt)
			if self.acceptedTypes == None or parsedLine.type in self.acceptedTypes:
				if parsedLine.id in self.lines:
					cpt = 1
					while "%s-%d" % (parsedLine.id, cpt) in self.lines:
						cpt += 1
					parsedLine.id = "%s-%d" % (parsedLine.id, cpt)
				self.lines[parsedLine.id] = parsedLine
			progress.inc()
		progress.done()

	def sort(self):