diff SMART/Java/Python/test/Test_F_mappingToCoordinates.py @ 31:0ab839023fe4

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/Java/Python/test/Test_F_mappingToCoordinates.py	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,22 @@
+import unittest
+import os
+from SMART.Java.Python.misc import Utils
+
+class Test_F_mappingToCoordinates(unittest.TestCase):
+
+
+    def setUp(self):
+        self._inputFileName = 'inputMTC.sam'
+        self._outputFileName = 'outputGff.gff3'
+        self._expOutputFileName = '../TestFiles/expOutputGff.gff3'
+        
+    def tearDown(self):
+        os.remove(self._outputFileName)
+
+    def test_run_default_option(self):
+        cmd = 'python ../mappingToCoordinates.py -i ../TestFiles/%s -f sam -o %s -v 0' % (self._inputFileName, self._outputFileName)
+        os.system(cmd)
+        self.assertTrue(Utils.diff(self._outputFileName, self._expOutputFileName))
+        
+if __name__ == "__main__":
+    unittest.main()