diff SMART/Java/Python/testInstall.py @ 31:0ab839023fe4

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/Java/Python/testInstall.py	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,103 @@
+#! /usr/bin/env python
+#
+# Copyright INRA-URGI 2009-2010
+# 
+# This software is governed by the CeCILL license under French law and
+# abiding by the rules of distribution of free software. You can use,
+# modify and/ or redistribute the software under the terms of the CeCILL
+# license as circulated by CEA, CNRS and INRIA at the following URL
+# "http://www.cecill.info".
+# 
+# As a counterpart to the access to the source code and rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty and the software's author, the holder of the
+# economic rights, and the successive licensors have only limited
+# liability.
+# 
+# In this respect, the user's attention is drawn to the risks associated
+# with loading, using, modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean that it is complicated to manipulate, and that also
+# therefore means that it is reserved for developers and experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or
+# data to be ensured and, more generally, to use and operate it in the
+# same conditions as regards security.
+# 
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license and that you accept its terms.
+#
+"""
+Test if the configuration is sound
+"""
+
+import sys
+import os
+import subprocess
+
+# Test Python files
+try :
+    from SMART.Java.Python.misc.RPlotter import *
+except:
+    print "Cannot find Python scripts! Update PYTHONPATH (currently %s) environment variable and see configuration in the documentation!" % (os.environ["PYTHONPATH"] if "PYTHONPATH" in os.environ else "empty")
+    sys.exit(3)
+
+try :
+    from SMART.Java.Python.mySql.MySqlTranscriptTable import *
+    from SMART.Java.Python.mySql.MySqlConnection import *
+except:
+    print "SQLite is not installed ! Please read the documentation!"
+    sys.exit(4)
+
+
+if __name__ == "__main__":
+    
+    print "Python scripts are correctly read."
+    
+    # Test mySQL
+    connection = MySqlConnection()
+    table = MySqlTranscriptTable(connection)
+
+    try:
+        table.createTranscriptTable()
+    except:
+        print "Cannot connect to the SQLite database! See configuration in the documentation!"
+        sys.exit(5)
+        
+    print "SQLite database is correctly set up."
+
+        
+    # Test R
+    fileName = "tmpFile.R"
+    file = open(fileName, "w")
+    file.write("?licence\n")
+    file.close()
+    rCommand = "R"
+    if "SMARTRPATH" in os.environ:
+        rCommand = os.environ["SMARTRPATH"]
+    command = "\"%s\" CMD BATCH %s" % (rCommand, fileName)
+    status    = subprocess.call(command, shell=True)
+    os.remove(fileName)
+    outputFileName = "%sout" % (fileName)
+    if os.path.exists(outputFileName):
+        os.remove(outputFileName)
+
+    if status != 0:
+        print "Problem with the execution of R script (command '%s' did not work, current directory is %s, status is %d)! See configuration in the documentation!" % (command, os.getcwd(), status)
+        sys.exit(6)
+
+    line = {0: 1, 1: 2}
+    pngFileName = "tmpFile.png"
+    plotter = RPlotter(pngFileName)
+    plotter.addLine(line)
+    try:
+        plotter.plot()
+    except:
+        print "Problem with the execution of R script: library 'RColorBrewer' is missing! See configuration in the documentation!"
+        sys.exit(7)
+    os.remove(pngFileName)
+
+    print "R is available."
+
+    print "Set up is fine! Enjoy S-MART!"