Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/FindOverlaps_optim.xml @ 31:0ab839023fe4

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Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 769e306b7933
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/galaxy/FindOverlaps_optim.xml	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,16 @@
+<tool id="findOverlaps" name="findOverlaps">
+	<description>Finds the overlapped reference reads.</description>
+	<command interpreter="python">
+		../Java/Python/FindOverlaps_optim.py -i $inputRef -j $inputQ -o $outputFileGff 
+	</command>
+	
+  <inputs>
+    <param name="inputRef" type="data" label="Input Reference File" format="gff3"/>
+    <param name="inputQ" type="data" label="Input Query File" format="gff3"/>
+  </inputs>
+
+	<outputs>
+		<data name="outputFileGff" format="gff3"/>
+	</outputs> 
+	
+</tool>
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