Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/getIntrons.xml @ 31:0ab839023fe4

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Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
children
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--- a/SMART/galaxy/getIntrons.xml	Mon Apr 29 03:45:52 2013 -0400
+++ b/SMART/galaxy/getIntrons.xml	Tue Apr 30 14:33:21 2013 -0400
@@ -1,8 +1,5 @@
 <tool id="getIntrons" name="get introns">
     <description>Get the introns of a set of transcripts.</description>
-	<requirements>
-		<requirement type="set_environment">PYTHONPATH</requirement>
-	</requirements>
     <command interpreter="python">
 		../Java/Python/getIntrons.py -i $formatType.inputFileName
 		#if $formatType.FormatInputFileName == 'bed':
@@ -54,7 +51,7 @@
     </inputs>
         
     <outputs>
-        <data format="gff3" name="outputFileGff" label="[get introns] output file"/>       
+        <data format="gff3" name="outputFileGff" label="[getIntrons -> gff3] Output File"/>       
     </outputs> 
 <tests>
     <test>
@@ -64,8 +61,4 @@
     </test>
   </tests>
 
-	<help>
-Provide all the introns of an annotation file.
-	</help>
-
 </tool>