diff SMART/galaxy/restrictTranscriptList.xml @ 31:0ab839023fe4

Uploaded

--- a/SMART/galaxy/restrictTranscriptList.xml	Mon Apr 29 03:45:52 2013 -0400
+++ b/SMART/galaxy/restrictTranscriptList.xml	Tue Apr 30 14:33:21 2013 -0400
@@ -1,8 +1,5 @@
 <tool id="restrictTranscriptList" name="restrict transcript list">
-  <description>Select the features which are located in a given locus.</description>
-	<requirements>
-		<requirement type="set_environment">PYTHONPATH</requirement>
-	</requirements>
+  <description>Keep the coordinates which are located in a given position.</description>
   <command interpreter="python"> ../Java/Python/restrictTranscriptList.py -i $formatType.inputFileName
 		#if $formatType.FormatInputFileName == 'bed':
 			-f bed
@@ -78,7 +75,7 @@
 	</conditional>	
   
 	<conditional name="OptionStart">
-			<param name="start" type="select" label="start region of the locus">
+			<param name="start" type="select" label="restrict to the start of the transcript">
 				<option value="Yes">Yes</option>
 				<option value="No" selected="true">No</option>
 			</param>
@@ -90,7 +87,7 @@
 	</conditional>
 		
 	<conditional name="OptionEnd">
-			<param name="end" type="select" label="end region of the locus">
+			<param name="end" type="select" label="restrict to the end of the transcript">
 				<option value="Yes">Yes</option>
 				<option value="No" selected="true">No</option>
 			</param>
@@ -103,11 +100,10 @@
   </inputs>
 
   <outputs>
-    <data format="gff3" name="outputFile" label="[restrict transcript list] output file"/>
+    <data format="gff3" name="outputFile" label="[restrictTranscriptList] Output File"/>
   </outputs>
 
   <help>
-Reads a list of genomic coordinates and outputs those which on a given chromosome and / or between two given positions.
   </help>
 <tests>
     <test>