diff commons/core/parsing/test/Test_WigParser.py @ 31:0ab839023fe4

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/core/parsing/test/Test_WigParser.py	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,28 @@
+from commons.core.utils.FileUtils import FileUtils
+from commons.core.parsing.WigParser import WigParser
+import unittest
+
+class Test_WigParser(unittest.TestCase):
+    
+    def tearDown(self):
+        FileUtils.removeFilesByPattern("data/.chr*.index")
+
+    def test_GetRange1(self):
+        self.parser = WigParser("data/test.wig")
+        outputRange = [0.0, 1.1, 1.2, 0.0, 1.4, 1.5, 0.0, 1.7, 0.0, 1.9, 0.0]
+        self.assertEqual(self.parser.getRange("chr1", 10, 20), outputRange)
+        outputRange = [0.0, 9.5, 9.6, 0.0]
+        self.assertEqual(self.parser.getRange("chrX", 4, 7), outputRange)
+
+    def test_GetRange2(self):
+        self.parser = WigParser("data/test1.wig")
+        outputRange = [0.0, 1.1, 1.2, 0.0, 1.4, 1.5, 0.0, 1.7, 0.0, 1.9, 0.0]
+        self.assertEqual(self.parser.getRange("chr2", 10, 20), outputRange)
+
+    def test_GetRange3(self):
+        self.parser = WigParser("data/test2.wig")
+        outputRange = [1.4, 1.5]
+        self.assertEqual(self.parser.getRange("chr3", 14, 15), outputRange)
+
+if __name__ == '__main__':
+        unittest.main()