diff commons/launcher/tests/Test_BlatClusterLauncher.py @ 31:0ab839023fe4

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/launcher/tests/Test_BlatClusterLauncher.py	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,34 @@
+import unittest
+from commons.launcher.BlatClusterLauncher import BlatClusterLauncher
+
+
+class Test_BlatClusterLauncher( unittest.TestCase ):
+    
+    def setUp( self ):
+        self._i = BlatClusterLauncher()
+        
+        
+    def tearDown( self ):
+        self._i = None
+        
+        
+    def test_getSpecificHelpAsString( self ):
+        exp = ""
+        exp += "\nspecific options:"
+        exp += "\n     -s: name of the subject file (format='fasta')"
+        exp += "\n     -p: parameters for 'blat'"
+        exp += "\n     -Z: concatenate output files"
+        exp += "\n     -A: same sequences (all-by-all)"
+        obs = self._i.getSpecificHelpAsString()
+        self.assertEqual( exp, obs )
+        
+        
+    def test_setASpecificAttributeFromCmdLine( self ):
+        self._i.setASpecificAttributeFromCmdLine( "-s", "dummySubjectFile.fa" )
+        self.assertEqual( "dummySubjectFile.fa", self._i.getSubjectFile() )
+        
+        
+test_suite = unittest.TestSuite()
+test_suite.addTest( unittest.makeSuite( Test_BlatClusterLauncher ) )
+if __name__ == "__main__":
+    unittest.TextTestRunner(verbosity=2).run( test_suite )