diff commons/pyRepetUnit/fastaTranslation/allFrames/tests/Test_F_TranslateAfastaFileInAllFrameAndReplaceStopsByX.py @ 31:0ab839023fe4

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/pyRepetUnit/fastaTranslation/allFrames/tests/Test_F_TranslateAfastaFileInAllFrameAndReplaceStopsByX.py	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,23 @@
+import unittest
+import os
+from commons.core.utils.FileUtils import FileUtils
+
+class Test_F_TranslateAfastaFileInAllFrameAndReplaceStopsByX(unittest.TestCase):
+    
+    def setUp(self):
+        self._inputFile = "./datas/ConsensusTestFile_nt.fsa"
+        self._outputFile = "./datas/PreprocessOuputFile"
+        self._prg = "translateAfastaFileInAllFrameAndReplaceStopsByX_script.py"
+        
+        
+    def testAcceptanceTranslateAfastaFileInAllFrameAndReplaceStopsByX_script(self):
+        cmd = self._prg
+        cmd += " -i %s" % ( self._inputFile )
+        cmd += " -o %s" % ( self._outputFile )
+        os.system( cmd )        
+        self.assertTrue(FileUtils.are2FilesIdentical( self._outputFile, "./datas/ConsensusTestFile_aaWithoutStop.fsa"))
+        os.system( "rm " + self._outputFile )
+               
+        
+if __name__ == "__main__":                 
+    unittest.main()
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