Mercurial > repos > yufei-luo > s_mart
diff commons/pyRepetUnit/profilesDB/tests/Test_F_ProfilesDB4Repet.py @ 31:0ab839023fe4
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author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/commons/pyRepetUnit/profilesDB/tests/Test_F_ProfilesDB4Repet.py Tue Apr 30 14:33:21 2013 -0400 @@ -0,0 +1,20 @@ +import unittest +import os +from commons.core.utils.FileUtils import FileUtils + +class Test_F_ProfilesDB4Repet(unittest.TestCase): + + def setUp(self): + self._inputDBFile = "%s/Tools/ProfilesDB4Repet_v2.hmm" % os.environ["REPET_DATA"] + self._outputDBFile = "output.hmm" + + def tearDown(self): + os.remove(self._outputDBFile) + + def test_run_as_script(self): + cmd = "python ../ProfilesDB4Repet.py -i " + self._inputDBFile + " -o " + self._outputDBFile + os.system(cmd) + self.assertEqual(FileUtils.getNbLinesInSingleFile(self._outputDBFile), 375854) + +if __name__ == "__main__": + unittest.main()