Mercurial > repos > yufei-luo > s_mart

diff SMART/Java/Python/clusterize.py @ 46:169d364ddd91

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Uploaded
author m-zytnicki
date Mon, 30 Sep 2013 03:19:26 -0400
parents 44d5973c188c
children 90f4b29d884f
line wrap: on
line diff
--- a/SMART/Java/Python/clusterize.py	Wed Sep 18 08:51:22 2013 -0400
+++ b/SMART/Java/Python/clusterize.py	Mon Sep 30 03:19:26 2013 -0400
@@ -104,8 +104,7 @@
 		else:
 			progress = Progress(self.nbElementsPerChromosome[chromosome], "Checking chromosome %s" % (chromosome), self.verbosity)
 			parser   = NCListFileUnpickle(self.splittedFileNames[chromosome], self.verbosity)
-		transcripts     = []
-		self.nbElements = 0
+		transcripts = []
 		for newTranscript in parser.getIterator():
 			newTranscripts = []
 			if newTranscript.__class__.__name__ == "Mapping":
@@ -119,7 +118,6 @@
 					newTranscripts.append(oldTranscript)
 			newTranscripts.append(newTranscript)
 			transcripts = newTranscripts
-			self.nbElements += 1
 			progress.inc()
 		for transcript in transcripts:
 			self._write(transcript)