diff commons/core/parsing/FastaParser.py @ 46:169d364ddd91

Uploaded

--- a/commons/core/parsing/FastaParser.py	Wed Sep 18 08:51:22 2013 -0400
+++ b/commons/core/parsing/FastaParser.py	Mon Sep 30 03:19:26 2013 -0400
@@ -80,7 +80,7 @@
 		if self.currentLine != None:
 			if self.currentLine[0] != ">":
 				raise Exception("First line is weird: %s" % (self.currentLine))
-			name = self.currentLine[1:].split()[0].replace("|", "_").replace(".", "_")
+			name = self.currentLine[1:].split()[0]
 			self.currentLine = None
 
 		for line in self.handle:
@@ -89,7 +89,7 @@
 				pass
 			elif line[0] == ">":
 				if name == None:
-					name = line[1:].split()[0].replace("|", "_").replace(".", "_")
+					name = line[1:].split()[0]
 				else:
 					self.currentLine = line
 					return Sequence(name, string)