Mercurial > repos > yufei-luo > s_mart
diff SMART/galaxy/removeExonLines.xml @ 59:2a4884ba3e5c
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author | m-zytnicki |
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date | Mon, 10 Feb 2014 03:39:09 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SMART/galaxy/removeExonLines.xml Mon Feb 10 03:39:09 2014 -0500 @@ -0,0 +1,18 @@ +<tool id="removeExonLines" name="remove exon lines"> + <description>Removes the introns of the transcript files.</description> + <requirements> + <requirement type="set_environment">PYTHONPATH</requirement> + </requirements> + <command interpreter="python"> ../Java/Python/RemoveExons.py -i $inputFile -f gff3 -o $outputFile </command> + <inputs> + <param name="inputFile" format="gff3" type="data" label="Input File"/> + </inputs> + + <outputs> + <data format="gff3" name="outputFile" label="[remove introns] output file"/> + </outputs> + + <help> + Simply remove the introns of the input file, thus getting the unmatured transcript. + </help> +</tool>