Mercurial > repos > yufei-luo > s_mart

diff tool_conf.xml @ 38:2c0c0a89fad7

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Uploaded
author m-zytnicki
date Thu, 02 May 2013 09:56:47 -0400
parents 44d5973c188c
children 169d364ddd91
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_conf.xml	Thu May 02 09:56:47 2013 -0400
@@ -0,0 +1,48 @@
+  <section id="s_mart" name="S-MART" version="">
+    <label id="Smart_Comparison" text="Comparison Tools" version=""/>
+      <tool file="s_mart/CompareOverlappingSmallQuery.xml"/>
+      <tool file="s_mart/CompareOverlappingSmallRef.xml"/>
+      <tool file="s_mart/compareOverlapping.xml"/>
+      <tool file="s_mart/getDifference.xml"/>
+      <tool file="s_mart/computeCoverage.xml"/>
+      <tool file="s_mart/GetFlanking.xml"/>
+      <tool file="s_mart/GetDifferentialExpression.xml"/>
+    <label id="Smart_Merge" text="Merge Tools" version=""/>
+      <tool file="s_mart/clusterize.xml"/>
+      <tool file="s_mart/mergeTranscriptLists.xml"/>
+      <tool file="s_mart/CollapseReads.xml"/>
+      <tool file="s_mart/clusterizeBySlidingWindows.xml"/>
+      <tool file="s_mart/mergeSlidingWindowsClusters.xml"/>
+    <label id="Smart_Visualization" text="Visualization Tools" version=""/>
+      <tool file="s_mart/getDistribution.xml"/>
+      <tool file="s_mart/getDistance.xml"/>
+      <tool file="s_mart/getSizes.xml"/>
+      <tool file="s_mart/plotCoverage.xml"/>
+      <tool file="s_mart/WrappGetLetterDistribution1.xml"/>
+      <tool file="s_mart/plotTranscriptList.xml"/>
+    <label id="Smart_Sequence" text="Sequence Tools" version=""/>
+      <tool file="s_mart/CountReadGCPercent.xml"/>
+    <label id="Smart_Modification" text="Modification Tools" version=""/>
+      <tool file="s_mart/modifyGenomicCoordinates.xml"/>
+      <tool file="s_mart/modifySequenceList.xml"/>
+      <tool file="s_mart/trimSequences.xml"/>
+    <label id="Smart_Selection" text="Selection Tools" version=""/>
+      <tool file="s_mart/getExons.xml"/>
+      <tool file="s_mart/getIntrons.xml"/>
+      <tool file="s_mart/restrictFromSize.xml"/>
+      <tool file="s_mart/restrictTranscriptList.xml"/>
+    <label id="Smart_Conversion" text="Conversion Tools" version=""/>
+      <tool file="s_mart/ConvertTranscriptFile.xml"/>
+      <tool file="s_mart/coordinatesToSequence.xml"/>
+      <tool file="s_mart/mapperAnalyzer.xml"/>
+    <label id="Smart_WIG" text="WIG Manipulation Tools" version=""/>
+      <tool file="s_mart/getWigData.xml"/>
+      <tool file="s_mart/getWigDistance.xml"/>
+      <tool file="s_mart/getWigProfile.xml"/>
+    <label id="Smart_GFF" text="GFF Manipulation Tools" version=""/>
+      <tool file="s_mart/CleanTranscriptFile.xml"/>
+      <tool file="s_mart/changeTagName.xml"/>
+      <tool file="s_mart/changeGffFeatures.xml"/>
+      <tool file="s_mart/removeExonLines.xml"/>
+      <tool file="s_mart/SelectByTag.xml"/>
+  </section>