Mercurial > repos > yufei-luo > s_mart
diff SMART/galaxy/testArgum.xml @ 15:440ceca58672
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author | m-zytnicki |
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date | Mon, 22 Apr 2013 11:08:07 -0400 |
parents | 769e306b7933 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SMART/galaxy/testArgum.xml Mon Apr 22 11:08:07 2013 -0400 @@ -0,0 +1,24 @@ +<tool id="test_argument" name="test_argu" version="1.0.0"> + <description>To test the arguments from shell.</description> + <command> +../testArgu.sh $test_out +#for $i in $replicate_groups +#for $j in $i.replicates +$j.bam_alignment:#slurp +#end for +#end for + >> $Log_File </command> + <inputs> + <param format="gff3" name="anno_input_selected" type="data" label="Genome annotation in GFF3 file" help="A tab delimited format for storing sequence features and annotations"/> + <repeat name="replicate_groups" title="Replicate group" min="2"> + <repeat name="replicates" title="Replicate"> + <param format="fastq" name="bam_alignment" type="data" label="BAM alignment file" help="BAM alignment file. Can be generated from SAM files using the SAM Tools."/> + </repeat> + </repeat> + </inputs> + + <outputs> + <data format="txt" name="test_out" label="DESeq result"/> + <data format="txt" name="Log_File" label="DESeq result"/> + </outputs> +</tool>