Mercurial > repos > yufei-luo > s_mart
diff SMART/galaxy/modifyFasta.xml @ 6:769e306b7933
Change the repository level.
| author | yufei-luo |
|---|---|
| date | Fri, 18 Jan 2013 04:54:14 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SMART/galaxy/modifyFasta.xml Fri Jan 18 04:54:14 2013 -0500 @@ -0,0 +1,49 @@ +<tool id="modifyFasta" name="modify fasta"> + <description>Extend or shring a list of sequences.</description> + <command interpreter="python"> ../Java/Python/modifyFasta.py -i $inputFile + #if $OptionStart.start == "Yes": + -s $OptionStart.startValue + #end if + + #if $OptionEnd.end == "Yes": + -e $OptionEnd.endValue + #end if + -o $outputFile + + </command> + + + <inputs> + <param name="inputFile" type="data" label="Input fasta File" format="fasta"/> + <conditional name="OptionStart"> + <param name="start" type="select" label="keep first nucleotides"> + <option value="Yes">Yes</option> + <option value="No" selected="true">No</option> + </param> + <when value="Yes"> + <param name="startValue" type="integer" value="0"/> + </when> + <when value="No"> + </when> + </conditional> + + <conditional name="OptionEnd"> + <param name="end" type="select" label="keep last nucleotides"> + <option value="Yes">Yes</option> + <option value="No" selected="true">No</option> + </param> + <when value="Yes"> + <param name="endValue" type="integer" value="0"/> + </when> + <when value="No"> + </when> + </conditional> + </inputs> + + <outputs> + <data format="fasta" name="outputFile" label="[modifyFasta] Output File"/> + </outputs> + + <help> + </help> +</tool>