diff commons/core/sql/ITableSeqAdaptator.py @ 6:769e306b7933

Change the repository level.

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+++ b/commons/core/sql/ITableSeqAdaptator.py	Fri Jan 18 04:54:14 2013 -0500
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+# Copyright INRA (Institut National de la Recherche Agronomique)
+# http://www.inra.fr
+# http://urgi.versailles.inra.fr
+#
+# This software is governed by the CeCILL license under French law and
+# abiding by the rules of distribution of free software.  You can  use, 
+# modify and/ or redistribute the software under the terms of the CeCILL
+# license as circulated by CEA, CNRS and INRIA at the following URL
+# "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability. 
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security. 
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license and that you accept its terms.
+
+
+## Interface for TableSeqAdaptator
+#
+class ITableSeqAdaptator(object):
+
+    ## Retrieve all the distinct accession names in a list.
+    #
+    # @return lAccessions list of accessions
+    #
+    # @warning old name was getListAccession
+    #
+    def getAccessionsList( self ):
+        pass
+    
+    ## Save sequences in a fasta file from a list of accession names.
+    # 
+    # @param lAccessions list of accessions
+    # @param outFileName string Fasta file
+    #
+    # @warning old name saveListAccessionInFastaFile
+    #
+    def saveAccessionsListInFastaFile( self, lAccessions, outFileName ):
+        pass
+    
+    ## insert bioseq instance
+    #
+    # @param seq bioseq 
+    # @param delayed boolean must the insert be delayed 
+    # 
+    # @warning old name was insASeq
+    #
+    def insert(self, seq, delayed = False):
+        pass
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