Mercurial > repos > yufei-luo > s_mart

diff SMART/Java/Python/CollapseReads.py @ 18:94ab73e8a190

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Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 769e306b7933
children
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line diff
--- a/SMART/Java/Python/CollapseReads.py	Mon Apr 22 11:11:10 2013 -0400
+++ b/SMART/Java/Python/CollapseReads.py	Mon Apr 29 03:20:15 2013 -0400
@@ -62,7 +62,7 @@
         
     def setInputFile(self, fileName, format):
         parserChooser = ParserChooser(self.verbosity)
-        parserChooser.findFormat(format, "transcript")
+        parserChooser.findFormat(format)
         self.parser = parserChooser.getParser(fileName)
         self.sortedFileName = "%s_sorted.pkl" % (os.path.splitext(fileName)[0])