Mercurial > repos > yufei-luo > s_mart
diff SMART/Java/Python/ComputeCoverage.py @ 18:94ab73e8a190
Uploaded
| author | m-zytnicki |
|---|---|
| date | Mon, 29 Apr 2013 03:20:15 -0400 |
| parents | 769e306b7933 |
| children |
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--- a/SMART/Java/Python/ComputeCoverage.py Mon Apr 22 11:11:10 2013 -0400 +++ b/SMART/Java/Python/ComputeCoverage.py Mon Apr 29 03:20:15 2013 -0400 @@ -130,7 +130,7 @@ parser.add_option("-g", "--format2", dest="format2", action="store", type="string", help="format of the second file [compulsory] [format: transcript file format]") parser.add_option("-t", "--introns", dest="introns", action="store_true", default=False, help="also include introns [format: boolean] [default: false]") parser.add_option("-o", "--output", dest="outputFileName", action="store", default=None, type="string", help="output file [format: output file in GFF3 format]") - parser.add_option("-v", "--verbosity", dest="verbosity", action="store", type="int", help="trace level [default: 1] [format: int]") + parser.add_option("-v", "--verbosity", dest="verbosity", action="store", default=1, type="int", help="trace level [default: 1] [format: int]") (options, args) = parser.parse_args() computer = CoverageComputer(options.verbosity)