Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/CountReadGCPercent.xml @ 18:94ab73e8a190

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Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
line wrap: on
line diff
--- a/SMART/galaxy/CountReadGCPercent.xml	Mon Apr 22 11:11:10 2013 -0400
+++ b/SMART/galaxy/CountReadGCPercent.xml	Mon Apr 29 03:20:15 2013 -0400
@@ -1,5 +1,8 @@
-<tool id="CountReadGCPercent" name="count read GCpercent">
+<tool id="CountReadGCPercent" name="count read GC percent">
     <description>Count GC percent for each read against a genome.</description>
+	<requirements>
+		<requirement type="set_environment">PYTHONPATH</requirement>
+	</requirements>
     <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command>
   <inputs>
       <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/>
@@ -7,7 +10,7 @@
   </inputs>
 
   <outputs>
-    <data format="gff3" name="outputFile" label="[CountReadGCPercent] Output File"/>
+    <data format="gff3" name="outputFile" label="[count read GC percent] Output File"/>
    </outputs>
 
   <help>