Mercurial > repos > yufei-luo > s_mart
diff SMART/galaxy/getDifference.xml @ 18:94ab73e8a190
Uploaded
author | m-zytnicki |
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date | Mon, 29 Apr 2013 03:20:15 -0400 |
parents | 440ceca58672 |
children | 0ab839023fe4 |
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--- a/SMART/galaxy/getDifference.xml Mon Apr 22 11:11:10 2013 -0400 +++ b/SMART/galaxy/getDifference.xml Mon Apr 29 03:20:15 2013 -0400 @@ -1,5 +1,8 @@ -<tool id="getDifference" name="get Difference"> +<tool id="getDifference" name="get difference"> <description>Gets all the regions of the genome, except the one given in an annotation file. Alternatively, it may also give all the elements from the first set which does not ovelap with the second set (at the nucleotide level).</description> + <requirements> + <requirement type="set_environment">PYTHONPATH</requirement> + </requirements> <command interpreter="python"> ../Java/Python/getDifference.py -i $formatType.inputFileName1 #if $formatType.FormatInputFileName1 == 'bed': @@ -119,7 +122,7 @@ <outputs> - <data name="outputFileGff" format="gff3" label="[getDifference]output File."/> + <data name="outputFileGff" format="gff3" label="[get difference] output file."/> </outputs> <help>