Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/restrictTranscriptList.xml @ 18:94ab73e8a190

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Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
line wrap: on
line diff
--- a/SMART/galaxy/restrictTranscriptList.xml	Mon Apr 22 11:11:10 2013 -0400
+++ b/SMART/galaxy/restrictTranscriptList.xml	Mon Apr 29 03:20:15 2013 -0400
@@ -1,5 +1,8 @@
 <tool id="restrictTranscriptList" name="restrict transcript list">
   <description>Select the features which are located in a given locus.</description>
+	<requirements>
+		<requirement type="set_environment">PYTHONPATH</requirement>
+	</requirements>
   <command interpreter="python"> ../Java/Python/restrictTranscriptList.py -i $formatType.inputFileName
 		#if $formatType.FormatInputFileName == 'bed':
 			-f bed
@@ -100,10 +103,11 @@
   </inputs>
 
   <outputs>
-    <data format="gff3" name="outputFile" label="[restrictTranscriptList] Output File"/>
+    <data format="gff3" name="outputFile" label="[restrict transcript list] output file"/>
   </outputs>
 
   <help>
+Reads a list of genomic coordinates and outputs those which on a given chromosome and / or between two given positions.
   </help>
 <tests>
     <test>
@@ -117,8 +121,4 @@
     </test>
   </tests>
 
-	<help>
-Reads a list of genomic coordinates and outputs those which on a given chromosome and / or between two given positions.
-	</help>
-
 </tool>