diff commons/launcher/tests/Test_MapClusterLauncher.py @ 18:94ab73e8a190

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/launcher/tests/Test_MapClusterLauncher.py	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,41 @@
+import unittest
+from commons.launcher.MapClusterLauncher import MapClusterLauncher
+
+
+class Test_MapClusterLauncher( unittest.TestCase ):
+    
+    
+    def setUp( self ):
+        self._i = MapClusterLauncher()
+        
+        
+    def tearDown( self ):
+        self._i = None
+        
+        
+    def test_getSpecificHelpAsString( self ):
+        exp = ""
+        exp += "\nspecific options:"
+        exp += "\n     -s: size above which a gap is not penalized anymore (default='%i')" % ( self._i.getGapSize() )
+        exp += "\n     -m: penalty for a mismatch (default='%i')" % ( self._i.getMismatchPenalty() )
+        exp += "\n     -O: penalty for a gap openning (default='%i')" % ( self._i.getGapOpenPenalty() )
+        exp += "\n     -e: penalty for a gap extension (default='%i')" % ( self._i.getGapExtendPenalty() )
+        obs = self._i.getSpecificHelpAsString()
+        self.assertEqual( exp, obs )
+        
+        
+    def test_setASpecificAttributeFromCmdLine( self ):
+        self._i.setASpecificAttributeFromCmdLine( "-s", "42" )
+        self.assertEqual( 42, self._i.getGapSize() )
+        
+        self._i.setASpecificAttributeFromCmdLine( "-m", "-7" )
+        self.assertEqual( -7, self._i.getMismatchPenalty() )
+        
+        self._i.setASpecificAttributeFromCmdLine( "-O", "15" )
+        self.assertEqual( 15, self._i.getGapOpenPenalty() )
+        
+        self._i.setASpecificAttributeFromCmdLine( "-e", "5" )
+        self.assertEqual( 5, self._i.getGapExtendPenalty() )
+        
+if __name__ == "__main__":
+        unittest.main()
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