diff commons/pyRepetUnit/profilesDB/tests/Test_F_ProfilesDB4Repet.py @ 18:94ab73e8a190

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/pyRepetUnit/profilesDB/tests/Test_F_ProfilesDB4Repet.py	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,20 @@
+import unittest
+import os
+from commons.core.utils.FileUtils import FileUtils
+
+class Test_F_ProfilesDB4Repet(unittest.TestCase):
+
+    def setUp(self):
+        self._inputDBFile = "%s/Tools/ProfilesDB4Repet_v2.hmm" % os.environ["REPET_DATA"]
+        self._outputDBFile = "output.hmm"
+
+    def tearDown(self):
+        os.remove(self._outputDBFile)
+
+    def test_run_as_script(self):
+        cmd = "python ../ProfilesDB4Repet.py -i " + self._inputDBFile + " -o " + self._outputDBFile
+        os.system(cmd)
+        self.assertEqual(FileUtils.getNbLinesInSingleFile(self._outputDBFile), 375854)
+        
+if __name__ == "__main__":
+    unittest.main()