diff commons/tools/setnum2id.py @ 18:94ab73e8a190

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/commons/tools/setnum2id.py	Mon Apr 29 03:20:15 2013 -0400
@@ -0,0 +1,83 @@
+#!/usr/bin/env python
+
+import os
+import sys
+import getopt
+import exceptions
+
+#-----------------------------------------------------------------------------
+
+def help():
+
+        print "\nusage:",sys.argv[0]," [ options ]"
+        print "option:"
+        print "    -h: this help"
+        print "    -i: input set file"
+        print "output on stdout\n"
+
+#-----------------------------------------------------------------------------
+
+def main():
+
+    inFileName = ""
+
+    try:
+        opts, args = getopt.getopt(sys.argv[1:],"hi:")
+    except getopt.GetoptError:
+        help()
+        sys.exit(1)
+    for o,a in opts:
+        if o == "-h":
+            help()
+            sys.exit(0)
+        if o == "-i":
+            inFileName = a
+
+    if inFileName == "":
+        print "*** Error: missing input file name"
+        help()
+        sys.exit(1)
+
+    inFile = open( inFileName, "r" )
+    line = inFile.readline()
+
+    dID2count = {}
+    count = 1
+
+    while 1:
+
+        if line == "":
+            break
+
+        line = line.split()
+
+        path = line[0]
+        sbjName = line[1]
+        qryName = line[2]
+        qryStart = line[3]
+        qryEnd = line[4]
+
+        key_id = path + "-" + qryName + "-" + sbjName
+        if key_id not in dID2count.keys():
+	    newPath = count
+	    count += 1
+	    dID2count[ key_id ] = newPath
+	else:
+	    newPath = dID2count[ key_id ]
+
+        data = str(newPath) + "\t" + sbjName + "\t" + qryName + "\t"
+        data += qryStart + "\t" + qryEnd
+
+        print data
+        sys.stdout.flush()
+
+        line = inFile.readline()
+
+    inFile.close()
+
+    return 0
+
+#-----------------------------------------------------------------------------
+
+if __name__ == '__main__':
+	main()