diff smart_toolShed/SMART/Java/Global.java @ 0:e0f8dcca02ed

Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/smart_toolShed/SMART/Java/Global.java	Thu Jan 17 10:52:14 2013 -0500
@@ -0,0 +1,70 @@
+/**
+ *
+ * Copyright INRA-URGI 2009-2010
+ * 
+ * This software is governed by the CeCILL license under French law and
+ * abiding by the rules of distribution of free software. You can use,
+ * modify and/ or redistribute the software under the terms of the CeCILL
+ * license as circulated by CEA, CNRS and INRIA at the following URL
+ * "http://www.cecill.info".
+ * 
+ * As a counterpart to the access to the source code and rights to copy,
+ * modify and redistribute granted by the license, users are provided only
+ * with a limited warranty and the software's author, the holder of the
+ * economic rights, and the successive licensors have only limited
+ * liability.
+ * 
+ * In this respect, the user's attention is drawn to the risks associated
+ * with loading, using, modifying and/or developing or reproducing the
+ * software by the user in light of its specific status of free software,
+ * that may mean that it is complicated to manipulate, and that also
+ * therefore means that it is reserved for developers and experienced
+ * professionals having in-depth computer knowledge. Users are therefore
+ * encouraged to load and test the software's suitability as regards their
+ * requirements in conditions enabling the security of their systems and/or
+ * data to be ensured and, more generally, to use and operate it in the
+ * same conditions as regards security.
+ * 
+ * The fact that you are presently reading this means that you have had
+ * knowledge of the CeCILL license and that you accept its terms.
+ *
+ */
+import java.util.Vector;
+import java.util.HashMap;
+import javax.swing.DefaultListModel;
+import javax.swing.JButton;
+import javax.swing.JTextField;
+
+public class Global {
+
+  public static int logAreaSize = 100;
+
+  public static String smartConfFileName = "smart.conf";
+
+  public static String smartProgramsFileName = "programs.txt";
+
+  public static String smartFormatsFileName = "formats.txt";
+
+  public static String pythonPath = new String();
+
+  public static String pythonCommand = "python";
+
+  public static String mysqlCommand = "mysql";
+
+  public static String rCommand = "R";
+
+  public static Files files = new Files();
+
+  public static Vector < String > fileNames = new Vector < String >();
+
+  public static FormatsContainer formats = new FormatsContainer();
+
+  public static boolean programRunning = false;
+
+  public static HashMap < JButton, JTextField > otherFilesChooser = new HashMap < JButton, JTextField >();
+
+  public static HashMap < JButton, JTextField > otherDirectoriesChooser = new HashMap < JButton, JTextField >();
+
+  public static HashMap < JButton, JTextField > otherFileConcatenationChooser = new HashMap < JButton, JTextField >();
+
+}