Mercurial > repos > yufei-luo > s_mart
diff smart_toolShed/SMART/galaxy/DiffExpAnal.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 10:52:14 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/smart_toolShed/SMART/galaxy/DiffExpAnal.xml Thu Jan 17 10:52:14 2013 -0500 @@ -0,0 +1,19 @@ +<tool id="testDiffExpAnal" name="Differential Expression Analysis"> + <description>Differential expression analysis for sequence count data</description> + <command interpreter="sh"> ../DiffExpAnal/testR.sh $inputFile $columnsOfGeneName $columnsOfCondition1 $columnsOfCondition2 $outputFileCSV $outputFilePNG 2>$outputLog </command> + <inputs> + <param name="inputFile" type="data" label="Input File" format="tabular"/> + <param name="columnsOfGeneName" type="text" value="0" label="Please indicate the column numbers of gene names with ',' separator. If There are not gene names, default value is 0."/> + <param name="columnsOfCondition1" type="text" value="1,2" label="Please indicate the column numbers of condition1 with ',' separator."/> + <param name="columnsOfCondition2" type="text" value="3,4" label="Please indicate the column numbers of condition2 with ',' separator."/> + </inputs> + + <outputs> + <data format="tabular" name="outputFileCSV" label="[DiffExpAnal] Output CSV File"/> + <data format="png" name="outputFilePNG" label="[DiffExpAnal] Output PNG File"/> + <data format="tabular" name="outputLog" label="[DiffExpAnal] Log File"/> + </outputs> + + <help> + </help> +</tool>