Mercurial > repos > yufei-luo > s_mart

diff smart_toolShed/SMART/galaxy/FindOverlaps_optim.xml @ 0:e0f8dcca02ed

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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/smart_toolShed/SMART/galaxy/FindOverlaps_optim.xml	Thu Jan 17 10:52:14 2013 -0500
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+<tool id="findOverlaps" name="findOverlaps">
+	<description>Finds the overlapped reference reads.</description>
+	<command interpreter="python">
+		../Java/Python/FindOverlaps_optim.py -i $inputRef -j $inputQ -o $outputFileGff 
+	</command>
+	
+  <inputs>
+    <param name="inputRef" type="data" label="Input Reference File" format="gff3"/>
+    <param name="inputQ" type="data" label="Input Query File" format="gff3"/>
+  </inputs>
+
+	<outputs>
+		<data name="outputFileGff" format="gff3"/>
+	</outputs> 
+	
+</tool>
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