view commons/core/sql/test/Test_TableMatchAdaptator.py @ 31:0ab839023fe4

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import unittest
import time
import os
from commons.core.sql.DbMySql import DbMySql
from commons.core.coord.Match import Match
from commons.core.sql.TableMatchAdaptator import TableMatchAdaptator


class Test_TableMatchAdaptator( unittest.TestCase ):
    
    def setUp( self ):
        self._uniqId = "%s_%s" % (time.strftime("%Y%m%d%H%M%S") , os.getpid())
        self._configFileName = "dummyConfigFile_%s" % self._uniqId
        self._iDb = DbMySql()
        self._table = "dummyMatchTable_%s" % self._uniqId
        self._tMatchA = TableMatchAdaptator( self._iDb, self._table )
        
    def tearDown( self ):
        self._uniqId = None
        self._iDb.dropTable( self._table )
        self._iDb.close()
        self._table = None
        self._tMatchA = None
        
##################################################################################
################## Tests for methods in ITableMatchAdaptator #####################
##################################################################################  
    def test_insert(self):
        match = Match()  

        tuple = ("QName1", 1, 5, 5, 0.1, 0.2, "SName1", 5, 25, 20, 0.15, 1e-20, 15, 87.2, 1)
       
        match.setFromTuple(tuple)
                              
        self._iDb.createTable( self._table, "match", "" )        
        self._tMatchA.insert( match, False )
        
        expTMatchTuple = (('QName1', 1L, 5L, 5L, 0.1, 0.2, 'SName1', 5L, 25L, 20L, 0.15, 1e-20, 15L, 87.2, 1L),)
        
        sqlCmd = "SELECT * FROM %s" % ( self._table )
        self._iDb.execute( sqlCmd )
        obsTmatchTuple = self._iDb.cursor.fetchall()
        
        self.assertEquals( expTMatchTuple, obsTmatchTuple )
        

    def test_insert_empty_match(self):
        match = Match()  

        tuple = ("", -1, -1, 5, 0.1, 0.2, "SName1", 5, 25, 20, 0.15, 1e-20, 15, 87.2, 1)
       
        match.setFromTuple(tuple)
                              
        self._iDb.createTable( self._table, "match", "" )        
        self._tMatchA.insert( match, False )
        
        expTMatchTuple = ()
        
        sqlCmd = "SELECT * FROM %s" % ( self._table )
        self._iDb.execute( sqlCmd )
        obsTmatchTuple = self._iDb.cursor.fetchall()
        
        self.assertEquals( expTMatchTuple, obsTmatchTuple )  
               
    
    def test_insertList(self):
        match1 = Match() 
        match2 = Match()   

        tuple1 = ("QName1", 1, 5, 5, 0.1, 0.2, "SName1", 5, 25, 20, 0.15, 1e-20, 15, 87.2, 1)
        tuple2 = ("QName2", 2, 5, 5, 0.1, 0.2, "SName2", 6, 25, 20, 0.15, 1e-20, 15, 87.2, 2)
       
        match1.setFromTuple(tuple1)
        match2.setFromTuple(tuple2)
                              
        self._iDb.createTable( self._table, "match", "" )        
        self._tMatchA.insertList( [ match1, match2 ], False )
        
        expTMatchTuple = (('QName1', 1L, 5L, 5L, 0.1, 0.2, 'SName1', 5L, 25L, 20L, 0.15, 1e-20, 15L, 87.2, 1L),\
                          ('QName2', 2L, 5L, 5L, 0.1, 0.2, 'SName2', 6L, 25L, 20L, 0.15, 1e-20, 15L, 87.2, 2L))
        
        sqlCmd = "SELECT * FROM %s" % ( self._table )
        self._iDb.execute( sqlCmd )
        obsTmatchTuple = self._iDb.cursor.fetchall()
        
        self.assertEquals( expTMatchTuple, obsTmatchTuple )
        
        
    def test_getMatchListFromQuery(self):
        self._iDb.createTable( self._table, "match", "" )
        tuple1 = ("QName", 1, 5, 5, 0.1, 0.2, "SName", 5, 25, 20, 0.15, 1e-20, 15, 87.2, 1)
        tuple2 = ("QName", 1, 6, 6, 0.2, 0.1, "SName", 6, 26, 10, 0.18, 1e-30, 18, 85.2, 2)
        tuple3 = ("QName", 1, 7, 8, 0.1, 0.2, "SName", 5, 20, 15, 0.20, 1e-25, 20, 89.0, 3)
        tuple4 = ("QName", 1, 8, 8, 0.1, 0.1, "SName", 5, 15, 10, 0.17, 1e-23, 14, 89.5, 4)
        match1 = Match()
        match1.setFromTuple( tuple1 )
        match2 = Match()
        match2.setFromTuple( tuple2 )
        match3 = Match()
        match3.setFromTuple( tuple3 )
        match4 = Match()
        match4.setFromTuple( tuple4 )
        expListMatch = [ match1, match2, match3, match4 ]
        self._tMatchA.insertList(expListMatch)
        
        obsListMatch = self._tMatchA.getMatchListFromQuery("QName")
        
        self.assertEquals(expListMatch, obsListMatch)
        
        
    def test_getMatchListFromQuery_unexisted_seq_name(self):
        self._iDb.createTable( self._table, "match", "" )
        tuple1 = ("QName", 1, 5, 5, 0.1, 0.2, "SName", 5, 25, 20, 0.15, 1e-20, 15, 87.2, 1)
        tuple2 = ("QName", 1, 6, 6, 0.2, 0.1, "SName", 6, 26, 10, 0.18, 1e-30, 18, 85.2, 2)
        tuple3 = ("QName", 1, 7, 8, 0.1, 0.2, "SName", 5, 20, 15, 0.20, 1e-25, 20, 89.0, 3)
        tuple4 = ("QName", 1, 8, 8, 0.1, 0.1, "SName", 5, 15, 10, 0.17, 1e-23, 14, 89.5, 4)
        match1 = Match()
        match1.setFromTuple( tuple1 )
        match2 = Match()
        match2.setFromTuple( tuple2 )
        match3 = Match()
        match3.setFromTuple( tuple3 )
        match4 = Match()
        match4.setFromTuple( tuple4 )
        lMatch = [ match1, match2, match3, match4 ]
        self._tMatchA.insertList(lMatch)
        
        expListMatch = []
        obsListMatch = self._tMatchA.getMatchListFromQuery("Dummy")
        
        self.assertEquals(expListMatch, obsListMatch)
        

    def test_getMatchListFromId(self):
        self._iDb.createTable( self._table, "match", "" )
        tuple1 = ("QName", 1, 5, 5, 0.1, 0.2, "SName", 5, 25, 20, 0.15, 1e-20, 15, 87.2, 1)
        tuple2 = ("QName", 1, 6, 6, 0.2, 0.1, "SName", 6, 26, 10, 0.18, 1e-30, 18, 85.2, 2)
        tuple3 = ("QName", 1, 7, 8, 0.1, 0.2, "SName", 5, 20, 15, 0.20, 1e-25, 20, 89.0, 3)
        tuple4 = ("QName", 1, 8, 8, 0.1, 0.1, "SName", 5, 15, 10, 0.17, 1e-23, 14, 89.5, 4)
        match1 = Match()
        match1.setFromTuple( tuple1 )
        match2 = Match()
        match2.setFromTuple( tuple2 )
        match3 = Match()
        match3.setFromTuple( tuple3 )
        match4 = Match()
        match4.setFromTuple( tuple4 )
        lMatch = [ match1, match2, match3, match4 ]
        expListMatch = [ match1 ]
        self._tMatchA.insertList(lMatch)
        
        obsListMatch = self._tMatchA.getMatchListFromId(1)
        
        self.assertEquals(expListMatch, obsListMatch)
        
        
    def test_getMatchListFromIdList_empty_id_list( self ):
        self._iDb.createTable( self._table, "match", "" )
        tuple1 = ("QName", 1, 5, 5, 0.1, 0.2, "SName", 5, 25, 20, 0.15, 1e-20, 15, 87.2, 1)
        tuple2 = ("QName", 1, 6, 6, 0.2, 0.1, "SName", 6, 26, 10, 0.18, 1e-30, 18, 85.2, 2)
        tuple3 = ("QName", 1, 7, 8, 0.1, 0.2, "SName", 5, 20, 15, 0.20, 1e-25, 20, 89.0, 3)
        tuple4 = ("QName", 1, 8, 8, 0.1, 0.1, "SName", 5, 15, 10, 0.17, 1e-23, 14, 89.5, 4)
        match1 = Match()
        match1.setFromTuple( tuple1 )
        match2 = Match()
        match2.setFromTuple( tuple2 )
        match3 = Match()
        match3.setFromTuple( tuple3 )
        match4 = Match()
        match4.setFromTuple( tuple4 )
        lMatch = [ match1, match2, match3, match4 ]
        self._tMatchA.insertList(lMatch)
        
        expList = []
        obsList = self._tMatchA.getMatchListFromIdList([])
        self.assertEquals(expList, obsList)
        
        
    def test_getMatchListFromIdList( self ):
        self._iDb.createTable( self._table, "match", "" )
        tuple1 = ("QName", 1, 5, 5, 0.1, 0.2, "SName", 5, 25, 20, 0.15, 1e-20, 15, 87.2, 1)
        tuple2 = ("QName", 1, 6, 6, 0.2, 0.1, "SName", 6, 26, 10, 0.18, 1e-30, 18, 85.2, 2)
        tuple3 = ("QName", 1, 7, 8, 0.1, 0.2, "SName", 5, 20, 15, 0.20, 1e-25, 20, 89.0, 3)
        tuple4 = ("QName", 1, 8, 8, 0.1, 0.1, "SName", 5, 15, 10, 0.17, 1e-23, 14, 89.5, 4)
        match1 = Match()
        match1.setFromTuple( tuple1 )
        match2 = Match()
        match2.setFromTuple( tuple2 )
        match3 = Match()
        match3.setFromTuple( tuple3 )
        match4 = Match()
        match4.setFromTuple( tuple4 )
        lMatch = [ match1, match2, match3, match4 ]
        self._tMatchA.insertList(lMatch)
        
        lObs = self._tMatchA.getMatchListFromIdList((1, 2, 3))
        
        lExp = [match1, match2, match3]
        self.assertEquals(lExp, lObs)
        
    def test_getListOfAllMatches( self ):
        self._iDb.createTable( self._table, "match", "" )
        tuple1 = ("QName", 1, 5, 5, 0.1, 0.2, "SName", 5, 25, 20, 0.15, 1e-20, 15, 87.2, 1)
        tuple2 = ("QName", 1, 6, 6, 0.2, 0.1, "SName", 6, 26, 10, 0.18, 1e-30, 18, 85.2, 2)
        tuple3 = ("QName", 1, 7, 8, 0.1, 0.2, "SName", 5, 20, 15, 0.20, 1e-25, 20, 89.0, 3)
        tuple4 = ("QName", 1, 8, 8, 0.1, 0.1, "SName", 5, 15, 10, 0.17, 1e-23, 14, 89.5, 4)
        match1 = Match()
        match1.setFromTuple( tuple1 )
        match2 = Match()
        match2.setFromTuple( tuple2 )
        match3 = Match()
        match3.setFromTuple( tuple3 )
        match4 = Match()
        match4.setFromTuple( tuple4 )
        lMatch = [ match1, match2, match3, match4 ]
        expList = [ match1, match2, match3, match4 ]
        self._tMatchA.insertList(lMatch)

        obsList = self._tMatchA.getListOfAllMatches()
        self.assertEqual( expList, obsList )
        
        
    def test_getListOfAllMatches_empty_table( self ):
        self._iDb.createTable( self._table, "match", "" )
        expList = []
        obsList = self._tMatchA.getListOfAllMatches()
        self.assertEqual( expList, obsList )
        
            
test_suite = unittest.TestSuite()
test_suite.addTest( unittest.makeSuite( Test_TableMatchAdaptator ) )
if __name__ == "__main__":
    unittest.TextTestRunner(verbosity=2).run( test_suite )