view commons/launcher/tests/Test_MapClusterLauncher.py @ 31:0ab839023fe4

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import unittest
from commons.launcher.MapClusterLauncher import MapClusterLauncher


class Test_MapClusterLauncher( unittest.TestCase ):
    
    
    def setUp( self ):
        self._i = MapClusterLauncher()
        
        
    def tearDown( self ):
        self._i = None
        
        
    def test_getSpecificHelpAsString( self ):
        exp = ""
        exp += "\nspecific options:"
        exp += "\n     -s: size above which a gap is not penalized anymore (default='%i')" % ( self._i.getGapSize() )
        exp += "\n     -m: penalty for a mismatch (default='%i')" % ( self._i.getMismatchPenalty() )
        exp += "\n     -O: penalty for a gap openning (default='%i')" % ( self._i.getGapOpenPenalty() )
        exp += "\n     -e: penalty for a gap extension (default='%i')" % ( self._i.getGapExtendPenalty() )
        obs = self._i.getSpecificHelpAsString()
        self.assertEqual( exp, obs )
        
        
    def test_setASpecificAttributeFromCmdLine( self ):
        self._i.setASpecificAttributeFromCmdLine( "-s", "42" )
        self.assertEqual( 42, self._i.getGapSize() )
        
        self._i.setASpecificAttributeFromCmdLine( "-m", "-7" )
        self.assertEqual( -7, self._i.getMismatchPenalty() )
        
        self._i.setASpecificAttributeFromCmdLine( "-O", "15" )
        self.assertEqual( 15, self._i.getGapOpenPenalty() )
        
        self._i.setASpecificAttributeFromCmdLine( "-e", "5" )
        self.assertEqual( 5, self._i.getGapExtendPenalty() )
        
if __name__ == "__main__":
        unittest.main()