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view commons/pyRepetUnit/hmmer/profilsSearchInTEClassifier/tests/datas/DummyRepbase_aa.fa @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
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>GYPSY11_AG1p:classI:LTR_retrotransposon
AATTTNVFKKVPYTCNFYGRSCINMQKLLEKIEILDRTYDQVRQLNKCYRLCALTTLRNN
TKELYDEIQELLRKHESSIKDEILTTLVKKSRHLYYEINKCIKIHFERHPDSLNTTLSEN
QFDITIETKSDKMADIIELIKITTSLISKYDGNEKDLKGVVSNLNVLKKIVKPENRETII
ELVLGRLTGKARIVVGEAPKSIEDIVNKLQDRCSIKVTPEIVVSKMDNTKQTGTIEDFGS
IIEKLTQQLEEAYIAEEITPEVARKKATKSGISALSYGLKDGETKIIMRSSKFETLHEAI
EQAVKLELEDRTKKGKNEQTKILYSNATRNNRGYGNNYQGRNNYNRFTNNNNNRYQTQNP
PRFPPARYGHNNNRNNNNYRNNNFNNTRNQHANRQNNSNRNQYVQSNQRNNSNLQNNRAP
IHNTVTAEEQNNFLGQPQASENTQY
>GYPSY10_AG2p:classI:LTR_retrotransposon
AIRQPKFFRATRATKSSALHSGGDPEPTGGPALHKPIRATYTINVQKSNFIKTRLGLADS
ICNLFVDSGSDISIIKGNKVRPTQTYKPKDIVDIISVGEGTITTHGSTITDVIVEGKKIQ
QLFHIVPDNFKIPADGILGRDFFMDHRCIINYDTWIFSVKHDGEFLETPIEDTINDKTLI
PPRCEVIRKLDKLKELDTDAVVCAEQLQEDVLVGNCIVNKNYPFIKIINTSNKAKLVNIS
HIKTIPLNEFEIVKTNNHKNENRLAIIKELIRKENISEDTDTSFEQLLLSYNDIFHLPND
HLTTNNFYKQDIKLEDKRPVYIPNYKQNHSQGPEIKKQIEKMLQDDVIEHSVSHYNSPIL
LVPKKSSDEKKWRLVVDFRQLNKKLLPDKFPLPRIDSILDQLGRAKFFSTLDLMSGFHQI
PLEESSKKYTAFSSTDGHYQFKRLPFGLNISPNSFQRMMTIAMTGLTPECAFVYVDDIVV
VGASENHHLKNLEKVFDRLRHYNLKLNPEKSCFFKKEVTYLGHKITDKGILPDDSKYDSI
KNYPIPQNADDVRRYVAFCNYYRKFIPNFALKAKPLNSLLKKNTKFEWTQECQEAFEYLK
NTLISPQVLQYPDFSKPFILTTDASTMACGAVLAQEHGGKDMPICFASRTFTKGEANKAI
IEKELAAIHWAIMHFKHYLYGKKFTVKTDHRPIVYLFGMKNPSSKLTRMRLDLEEFDFTV
EFVKGKQNVVADALSRIKITSDEIKSINVITKSMSKPVTSDNVLGNTSESDQLKMFHALA
YDEVKDLPKLESSVKKNEDTIELIGKILNKRKSKELLSVRDIHLKTDIGLQEPLLVKDFQ
RRKEKSAIVQFIKNIEKKLVMKSITQLAISETDEIFKEVHPNELKQIANNHLKNIQILIY
TKPQKITNEKTINDILDKVHNTPTGGHIGQYKMYKKIRREYSWNKMKKTIKEFLDKCLTC
KLNKHQTKTAEPFVKTDTPNTPFEAVSIDTVGPFQKTNNNNRYAVTIQCNLTKHVTVIAI
PNKEANTVARAVIEKIMLIYGTNIKKFRTDMGTEYKNEIFKNISEILKIEHKFSTPYHPQ
TIGALERNHRCLNEYLRIFTNEHKDDWDDWINYYSFAYNTTPNLDHGYTPFELVFGRNER
ITPNVKDTYSPLYNYDDYSKEFKYRLKIAHNRTRKHIEQVKFKLLKEQQNINQVNFEIGD
QIALTNENRTKLDPVYKGPYKVKEINGPNMIIENTEGVVQKIHKNRAIKL
>ORF1p_TCN4#2:classI:LTR_retrotransposon
ALLSHQKIFFDTITPIEDQSKPRLRQDTPFPEMTTPPTDKESLQRKIKQIEDERKREREE
HKREMAELQAQMRGLLKREAEKRDLPPHNPATSSLPAKSESPHPPIMYDSLPQPKYSFPV
LSEHADAAAIHQHISKLRSIFTLMAAGYRYEPTAFEARKLAHAAQSLTGIRHLQFLEGDG
LQCRTFDDWAKAFKSAMLPLGWVSETEKKIYSLQPQLLRLDKIPLAIMDFKQWFALLKDS
DSPMSEDVATHWLRNHMTPGLLAELERDFGGENQLRQASLAELLKHMEICATRLLRYQSA
FAPIAPTRTPIAAVSPEASSPIDIAQWLNPRLPLPKGGAGRRARAHLASEQRCFLCRQPG
HKSPDCPKRKEPTAIAAVSTFDHEEAEFEQEEGEMFAEVLATHLAPELSVPPILLECRIG
TNGSPFLALFDTGATVTLVDPSLITTHQLQTYPSEQRRVVSLAGGARGPALQRRVGVEVC
IQNQVFALHGYVMPLHARYKVILGLDFIRSHGLLSGASRLGNLAPDLLGPVVASVTTADG
YXDLRLAILHEYHDIFPDNIGEVANYPPICDANSKVRHHINLTPGAIPFKSASYRSPHMW
RQQLIEEIQKHREAGRLRPSSSPWAAPAFLVKKENGKFRFICDYRGLNKVTTPDSTPVPN
VDDILHRAACGKIFAKIDLSDAFFQTLMHEPDIEKTAITTELGLFEWVVMPQGACNSPAT
QQRRLNEALRGLLGDSCEAYVDDIIVWAADAEDLDKRLRAVLAALRKSGLVCSPTKSEFF
RHKVKFLGHVISANHIGPDPAKLRTIASWPLPQSVKELRSFLGLLQYLRKFIPSLATHTR
TLTALLPPTPAAEKAWEKQQRALRKGQSPKDVLSWVWAWSSEATAAFEILKAKVAEISGL
RPLDYAAALSGECPIYLFTDASNHGTGAWLGQGPDPDHAFPVAYDSRSLSAAERNYPTHE
KELLAIVRALKLWRPLLLDVPIQVQTDHFTLKWFLQQRDLSERQKRWLGXLSRFDLRIDH
ISGVNNFIADALSRLGGVDDEQDGMETAEVSVAVLGLLGQDTSTITKVAQGYAQDQVMGA
WLQEEDRAPGVTLENVENGQGRSTSGVAMGRQAMCARYQX
>Neptune2_Ap_1p:classI:LINE
ANTRPVVDSENIDKYRNTAKKIGKYRNTASKVDEIPKLQKRGIRRNLLKDFDLFARRMRL
KDIFSRERNKQHPFHVKSTWEPPVQQSVALETFLEEVEFELANSPSKRPKDNLSPGERRA
LHNLLGDKTIIVKKADKGTTTVIMSREQKIKEGQILLNDLDNYRPLEKQMADETVEKIKQ
LTTSMLTESHIDEMTVKWLSQTPNPPRIPEFYTLTKIHRPTLVGRPIISGCDGPTERISC
FVDRLIQPIAQQQESYLKDSKDFINFIENTKLPKNTILASKDVTSLYTNIPQEEGITTVC
KAYEDFYKNRLPIPTNFLRRMLCLILKENSFQFNKRHYLQTHGTAMGTKMAVAFANIFMA
KIEKGIISKSIIKPLVWKRYIDDVFCLWDTNEDNIKEFVTRANHYHDNIKFTAEISDSEI
AFLGHKSVQRREIQQRLPPSMCKRIINKQRPFNTRNFYSCHPPGVKKGFIKGEALHLLRT
NSSHSTFNKNMQSFKTRLKNRGYPNEFLEKKGPX
>ERV45_MD_I_2p:classI:LTR_retrotransposon
ASSKHATGKLQTGPGPGPSKQWGNNCGAQSEKPIPSPTIRSLHRATPGSAGLDLCAASGL
ILTPDSPPALIPTGVKGPLPEGTMGLIIGRSSVSLRGIVVTPGVIDSDFTGELQIIVQPP
XKTVTIMKGQRIAQLLILPYVQTXNPILKTSRGQGGFGSSNWAFWVQEIKNSRPMKILNI
SGKNIEGLLDTGADTSCIAGKHWPPTWPTKISPSNLIGIGKITNAAQSSQILTWSDGNLS
GQFCPHVVPSLPVTIWGRDILSQMKVSLVTPEEDAQTPPNDEPLDFPEGPSPR