Mercurial > repos > yufei-luo > s_mart
view commons/pyRepetUnit/hmmer/tests/datas/configTestFunctionalHmmpfamLauncherInparallel.cfg @ 31:0ab839023fe4
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author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
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[db_config] user: oinizan host: pisano passwd: oinizan dbname:repet_oinizan [profil_search] Evalue: 10 InputFormat: FASTA ProfilDatabank: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/datas/myhmms [hmmer_config] input_file: ./datas/test_input_nt.fa output_file: ./datas/hmmpfam_output.align result_dir: /home/oinizan/repet_integration/repet_results query_dir: /home/oinizan/repet_integration/repet_datas/hmmer_in_parallel tmp_dir: /home/oinizan/repet_integration/repet_tmp [sge_config] queue: main.q groupid: fake [parse_config] scriptToLaunch: /home/oinizan/repet_integration/repet_pipe/repet_base/HmmOutput2alignAndTransformCoordInNtAndFilterScores_script.py