view commons/pyRepetUnit/hmmer/tests/datas/configTestFunctionalHmmpfamLauncherInparallel.cfg @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
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[db_config]
user: oinizan
host: pisano
passwd: oinizan
dbname:repet_oinizan

[profil_search]
Evalue: 10
InputFormat: FASTA
ProfilDatabank: /home/oinizan/repet_integration/repet_pipe/pyRepetUnit/hmmer/tests/datas/myhmms

[hmmer_config]
input_file: ./datas/test_input_nt.fa
output_file: ./datas/hmmpfam_output.align
result_dir: /home/oinizan/repet_integration/repet_results
query_dir: /home/oinizan/repet_integration/repet_datas/hmmer_in_parallel
tmp_dir: /home/oinizan/repet_integration/repet_tmp

[sge_config]
queue: main.q
groupid: fake

[parse_config]
scriptToLaunch: /home/oinizan/repet_integration/repet_pipe/repet_base/HmmOutput2alignAndTransformCoordInNtAndFilterScores_script.py