Mercurial > repos > yufei-luo > s_mart
view commons/pyRepetUnit/profilesDB/tests/Test_F_ProfilesDB2Map.py @ 31:0ab839023fe4
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author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
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import os import unittest from commons.core.utils.FileUtils import FileUtils from commons.pyRepetUnit.profilesDB.ProfilesDB2Map import ProfilesDB2Map class Test_F_ProfilesDB2Map(unittest.TestCase): def setUp(self): self.profilesDB2Map = ProfilesDB2Map() self._inputFile = "./datas/myhmms" self._outputFile = "./datas/outputFile.map" self._expectedFile = "./datas/profiles.map" self._createProfilesMapFile() def tearDown(self): os.remove(self._outputFile) os.remove(self._expectedFile) def testRun(self): self.profilesDB2Map.setInputFile(self._inputFile) self.profilesDB2Map.setOutputFile(self._outputFile) pfamDB = self.profilesDB2Map.run() self.assertTrue(FileUtils.are2FilesIdentical(self._expectedFile, self._outputFile)) def _createProfilesMapFile(self): f = open(self._expectedFile, "w") f.write("rrm\t\t1\t77\n") f.write("fn3\tFibronectin type III domain\t1\t84\n") f.write("pkinase\tProtein kinase domain\t1\t294\n") f.close() if __name__ == "__main__": unittest.main()