Mercurial > repos > yufei-luo > s_mart
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| author | m-zytnicki |
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| date | Tue, 30 Apr 2013 15:02:29 -0400 |
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---------- | NAME | ---------- S-MART Description ----------- Several tools are now available for mapping high-throughput sequencing data from a genome, but few can extract biological knowledge from the mapped reads. We have developed a toolbox, S-MART, which handles mapped RNA-Seq and ChIP-Seq data. S-MART is an intuitive and lightweight tool, performing several tasks that are usually required during the analysis of mapped RNA-Seq and ChIP-Seq reads, including data selection and data visualization. S-MART does not require a computer science background and thus can be used by all biologists through a graphical interface. S-MART can run on any personal computer, yielding results within an hour for most queries. Instructions ------------ Installation instructions and the user guide are available in the file "doc.pdf". Copyright --------- Copyright INRA-URGI 2009-2010 Authors ------- Matthias Zytnicki Contact ------- urgi-contact@versailles.inra.fr License ------- This library is distributed under the terms of the CeCILL license (http://www.cecill.info/index.en.html). See the LICENSE.txt file. Acknowledgements ---------------- This product needs the following softwares : * R, under the GNU General Public License * MySQL, under the GNU General Public License * Python, under the Python License, compatible with the GNU General Public License * MySQL for Python, under the GNU General Public License * Java, under the GNU General Public License