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view SMART/galaxy/CountReadGCPercent.xml @ 36:44d5973c188c

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author m-zytnicki
date Tue, 30 Apr 2013 15:02:29 -0400
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<tool id="CountReadGCPercent" name="count read GCpercent">
    <description>Count GC percent for each read against a genome.</description>
    <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command>
  <inputs>
      <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/>
      <param name="inputGffFile" type="data" label="Input File" format="gff3"/>
  </inputs>

  <outputs>
    <data format="gff3" name="outputFile" label="[CountReadGCPercent] Output File"/>
   </outputs>

  <help>
Count the GC% of a FASTA file.
  </help>
</tool>