Mercurial > repos > yufei-luo > s_mart

view tool_conf.xml @ 36:44d5973c188c

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author m-zytnicki
date Tue, 30 Apr 2013 15:02:29 -0400
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children 169d364ddd91
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  <section id="s_mart" name="S-MART" version="">
    <label id="Smart_Comparison" text="Comparison Tools" version=""/>
      <tool file="s_mart/CompareOverlappingSmallQuery.xml"/>
      <tool file="s_mart/CompareOverlappingSmallRef.xml"/>
      <tool file="s_mart/compareOverlapping.xml"/>
      <tool file="s_mart/getDifference.xml"/>
      <tool file="s_mart/computeCoverage.xml"/>
      <tool file="s_mart/GetFlanking.xml"/>
      <tool file="s_mart/GetDifferentialExpression.xml"/>
    <label id="Smart_Merge" text="Merge Tools" version=""/>
      <tool file="s_mart/clusterize.xml"/>
      <tool file="s_mart/mergeTranscriptLists.xml"/>
      <tool file="s_mart/CollapseReads.xml"/>
      <tool file="s_mart/clusterizeBySlidingWindows.xml"/>
      <tool file="s_mart/mergeSlidingWindowsClusters.xml"/>
    <label id="Smart_Visualization" text="Visualization Tools" version=""/>
      <tool file="s_mart/getDistribution.xml"/>
      <tool file="s_mart/getDistance.xml"/>
      <tool file="s_mart/getSizes.xml"/>
      <tool file="s_mart/plotCoverage.xml"/>
      <tool file="s_mart/WrappGetLetterDistribution1.xml"/>
      <tool file="s_mart/plotTranscriptList.xml"/>
    <label id="Smart_Sequence" text="Sequence Tools" version=""/>
      <tool file="s_mart/CountReadGCPercent.xml"/>
    <label id="Smart_Modification" text="Modification Tools" version=""/>
      <tool file="s_mart/modifyGenomicCoordinates.xml"/>
      <tool file="s_mart/modifySequenceList.xml"/>
      <tool file="s_mart/trimSequences.xml"/>
    <label id="Smart_Selection" text="Selection Tools" version=""/>
      <tool file="s_mart/getExons.xml"/>
      <tool file="s_mart/getIntrons.xml"/>
      <tool file="s_mart/restrictFromSize.xml"/>
      <tool file="s_mart/restrictTranscriptList.xml"/>
    <label id="Smart_Conversion" text="Conversion Tools" version=""/>
      <tool file="s_mart/ConvertTranscriptFile.xml"/>
      <tool file="s_mart/coordinatesToSequence.xml"/>
      <tool file="s_mart/mapperAnalyzer.xml"/>
    <label id="Smart_WIG" text="WIG Manipulation Tools" version=""/>
      <tool file="s_mart/getWigData.xml"/>
      <tool file="s_mart/getWigDistance.xml"/>
      <tool file="s_mart/getWigProfile.xml"/>
    <label id="Smart_GFF" text="GFF Manipulation Tools" version=""/>
      <tool file="s_mart/CleanTranscriptFile.xml"/>
      <tool file="s_mart/changeTagName.xml"/>
      <tool file="s_mart/changeGffFeatures.xml"/>
      <tool file="s_mart/removeExonLines.xml"/>
      <tool file="s_mart/SelectByTag.xml"/>
  </section>