Mercurial > repos > yufei-luo > s_mart
view SMART/galaxy/WrappGetLetterDistribution.xml @ 12:5a054da77808
Updated CompareOverlappingSmallRef.xml
author | m-zytnicki |
---|---|
date | Thu, 14 Mar 2013 05:37:35 -0400 |
parents | 769e306b7933 |
children | 440ceca58672 |
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<tool id="getLetterDistribution1" name="Get Letter Distribution"> <description>Calculate distribution for each nucleotide per position for all short reads (S-MART)</description> <command interpreter="python"> WrappGetLetterDistribution.py -i $inputFileName #if $formatType.FormatInputFileName == 'fasta': -f fasta #else : -f fastq #end if -c $ouputFileNameCSV -a $ouputFileNamePNG1 -b $ouputFileNamePNG2 </command> <inputs> <conditional name="formatType"> <param name="FormatInputFileName" type="select" label="Input File Format"> <option value="fasta">fasta</option> <option value="fastq" selected="true">fastq</option> </param> <when value="fasta"> <param name="inputFileName" format="fasta" type="data" label="Fasta Input File"/> </when> <when value="fastq"> <param name="inputFileName" format="fastq" type="data" label="Fastq Input File"/> </when> </conditional> </inputs> <outputs> <data name="ouputFileNameCSV" format="tabular" label="[getLetterDistribution] CSV File"/> <data name="ouputFileNamePNG1" format="png" label="[getLetterDistribution] PNG File 1"/> <data name="ouputFileNamePNG2" format="png" label="[getLetterDistribution] PNG File 2"/> </outputs> </tool>