Mercurial > repos > yufei-luo > s_mart
view SMART/galaxy/modifyFasta.xml @ 12:5a054da77808
Updated CompareOverlappingSmallRef.xml
author | m-zytnicki |
---|---|
date | Thu, 14 Mar 2013 05:37:35 -0400 |
parents | 769e306b7933 |
children |
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<tool id="modifyFasta" name="modify fasta"> <description>Extend or shring a list of sequences.</description> <command interpreter="python"> ../Java/Python/modifyFasta.py -i $inputFile #if $OptionStart.start == "Yes": -s $OptionStart.startValue #end if #if $OptionEnd.end == "Yes": -e $OptionEnd.endValue #end if -o $outputFile </command> <inputs> <param name="inputFile" type="data" label="Input fasta File" format="fasta"/> <conditional name="OptionStart"> <param name="start" type="select" label="keep first nucleotides"> <option value="Yes">Yes</option> <option value="No" selected="true">No</option> </param> <when value="Yes"> <param name="startValue" type="integer" value="0"/> </when> <when value="No"> </when> </conditional> <conditional name="OptionEnd"> <param name="end" type="select" label="keep last nucleotides"> <option value="Yes">Yes</option> <option value="No" selected="true">No</option> </param> <when value="Yes"> <param name="endValue" type="integer" value="0"/> </when> <when value="No"> </when> </conditional> </inputs> <outputs> <data format="fasta" name="outputFile" label="[modifyFasta] Output File"/> </outputs> <help> </help> </tool>